Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2508 125 7e-24 >seq2508 Length=53929 Score = 125 bits (138), Expect = 7e-24 Identities = 498/791 (63%), Gaps = 72/791 (9%) Strand=Plus/Plus Query 16672 TCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATT 16731 || ||| ||||| | ||| ||||| ||||| || ||||| ||||| |||| ||||||||| Sbjct 44942 TCGTTGATAATCTCCAACACGTTTCTCGAAGAAATTAGTCTTGCCTTCTAAAGATATATT 45001 Query 16732 CTCCATGAAATCAAAAGGATTAGTAGC----------TGAAAA-----TAT-------TT 16769 ||||||||| || || || || ||| || ||| ||| | Sbjct 45002 CTCCATGAAGTCGAACGGGTTTTCAGCGTTATAATACTGCAAAACGGTTATGGATAACTA 45061 Query 16770 TAGAG------------TACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATAT 16817 | || || || || ||| | | || | || || ||||| || | | Sbjct 45062 TGGAACTTACCTTCCCATATCCGAGCTCGACAAGCAAGCGGTCAGCGACAAACTCAACGT 45121 Query 16818 ATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAA 16877 | |||||||| || | ||||||||| ||||| || | || |||||||| ||| || | Sbjct 45122 ACTGGCACATCAACTTGCAGTTCATGCCTATCAGGCTGACAGGAAGAGCGTCCCCGAAGA 45181 Query 16878 ATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTG 16937 || || || | | || || ||||| ||||| | | || || ||| || Sbjct 45182 ATTTGTGTTCCACTTCCACGGCATCCTTCATAATCGCGATAGCCCGCTCTCTGGAAGGCT 45241 Query 16938 TATGTTTAAGATGT--TTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCT 16995 | ||| | |||| || |||| || || | |||||| || | ||||| |||| Sbjct 45242 T--GTTAACTATGTACTTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCG 45299 Query 16996 GCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAA 17055 || || ||||| ||| || || || |||||||| ||||| || || | |||||| Sbjct 45300 ACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAA 45359 Query 17056 TATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCG 17115 |||||| ||||| || || || |||| ||||| || | |||| | || | | || Sbjct 45360 TATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCT 45419 Query 17116 TTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTT 17175 || | | || | | ||| || |||||| || | |||| | ||| || | | Sbjct 45420 CTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTC 45479 Query 17176 TATGCAATCCATCGTTTC-TATGGCCTTAAATAA-------------------------- 17208 | || || | ||||| ||| || ||||| || Sbjct 45480 CACACATTCTA-GGTTTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAA 45538 Query 17209 --TTTCTCTTT----TTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACAT 17262 | || ||| ||| | |||| | || ||||| || || ||||| | ||||| Sbjct 45539 GTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACAT 45598 Query 17263 TTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTAT 17322 ||| || || || ||||||| ||| || || | ||| |||||||| || ||||| | || Sbjct 45599 TTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAAT 45658 Query 17323 TTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGC 17382 |||||| || |||||| || ||||||||| ||||| |||||||| ||||| Sbjct 45659 TTGAACCTCTTGACTGAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGC 45718 Query 17383 GAAAAACGCCA 17393 |||||||||| Sbjct 45719 AAAAAACGCCA 45729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516988701526440