Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2508 95.1 1e-14 >seq2508 Length=53929 Score = 95.1 bits (104), Expect = 1e-14 Identities = 206/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| || || |||| || |||||||| || || || ||||| | ||| || || Sbjct 45570 ATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGC 45629 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 | |||||| ||||| || || || | ||||| || || ||||| || ||| Sbjct 45630 ATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGCAGA 45689 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATAT 16651 || || ||||||||||| || || ||||||||||||| | || ||||| | Sbjct 45690 TTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGG 45749 Query 16652 TTTTC-GTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTC 16710 || || | ||| | | |||||| | | ||| || || | ||| ||||| || Sbjct 45750 CGCTCTCCCACCTTTAATCGT-TCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTC 45808 Query 16711 TGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTAT 16770 ||||||||| |||||||||||||| || || ||| || || || || || || Sbjct 45809 AACAGTCCAAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAAT 45868 Query 16771 GGGAAA 16776 ||||| Sbjct 45869 AGGAAA 45874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 510864098927560