Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2508 152 6e-32 >seq2508 Length=53929 Score = 152 bits (168), Expect = 6e-32 Identities = 414/631 (66%), Gaps = 41/631 (6%) Strand=Plus/Plus Query 24123 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 24182 || |||| || || | |||||| ||| |||||||| |||| |||||| | ||| || Sbjct 45256 TTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTA 45315 Query 24183 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 24242 || || | |||||||| ||||| |||||||| ||||||||||| | || || | Sbjct 45316 CTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTT 45375 Query 24243 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGG-- 24300 || || || || | || || ||||| ||| |||| | ||||| || ||| | || Sbjct 45376 CCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGAC 45435 Query 24301 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 24358 || ||||| ||||| ||| ||||||| | |||||| || |||| | | || Sbjct 45436 TTCG-TGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACAC-ATTCTAGGT 45493 Query 24359 CTC-TATAGCATTAAAGA--------------GAT---------AGtt-----ttt---- 24385 || |||||||||||| | ||| |||| ||| Sbjct 45494 TTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCG 45553 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 ||| ||| ||||| | || || || || | |||| ||||||||| ||||| || || Sbjct 45554 TTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || | ||| ||||| | ||| || || || | || || | ||| || || ||| || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 ||||| || | |||||| || || ||||| ||||| ||||||||||||| || Sbjct 45674 GAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGAC 45733 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 24625 | ||| || | || | ||| | | |||||| | | ||| || || Sbjct 45734 GTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGA 45793 Query 24626 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCAGA 24684 | ||| ||||| || || |||||||| || ||| |||||||||| || |||| ||| | Sbjct 45794 AAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCATA 45852 Query 24685 TGTCATGATATTGAATTGGAAAAATAACAAA 24715 | || | ||| ||||| ||||| | ||||| Sbjct 45853 TTTCGTTATACTGAATAGGAAAGAGCACAAA 45883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593082733293840