Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2508 203 3e-47 seq4653 113 5e-20 seq13344 95.1 1e-14 >seq2508 Length=53929 Score = 203 bits (224), Expect = 3e-47 Identities = 398/588 (68%), Gaps = 34/588 (6%) Strand=Plus/Minus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||||||||| | ||| || || ||||| || ||||| || || || || ||||| | Sbjct 45841 TACAAAAAGGCAGTGGCCTCCTTTTGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTG 45782 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 | ||| ||||| || || || | |||||||| ||||| |||| ||||| ||| Sbjct 45781 ACCGATTGGGAACGATTAAAGGTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTT 45722 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTG 116827 || |||||||||||||| |||||| ||| |||||| ||||||| ||| ||| ||||| Sbjct 45721 TTTGCCGCCAGCGACGGTATCGTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTT 45662 Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 || | | || ||||| ||||| || || | || || ||| ||||||| | || || Sbjct 45661 CAAATTCCTGAAGCGCGCTGCTTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCT 45602 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGA--GGAGAA----- 116937 |||||||||| || || ||||||||| | | || || || || Sbjct 45601 GAAATGTATTGTCTACTTATAGACACGTACATCAAAGACCCTAAAGAACGGTAAATTGAT 45542 Query 116938 --------GCTC---CGT-----------TTGTTGAACGCCAT-CGAGACGATGCCGTGC 116974 |||| ||| ||||| || || || ||| || | || Sbjct 45541 AACTTGCTGCTCTATCGTTCAGTGACTTCTTGTTTAATGCTATACGAAAC-CTAGAATGT 45483 Query 116975 GTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGC 117034 || || |||||| | ||||| || ||||| | | || || || |||| || Sbjct 45482 GTGGAACGCAAGGCCCAATGGGCTCTAAATTGGATTGGTGACACGAAGTCCACCTTTGGG 45423 Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||| | |||||||||| || || || |||||||| || || ||||| || ||||| || Sbjct 45422 GAGAGACTGGTGGCCTATGCAGCAGTTGAGGGCGTATTTTTCTCGGGAAGCTTCGCTGCG 45363 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 |||||||||||||| || || |||||||||||||| | || ||||| || || ||||| Sbjct 45362 ATATTTTGGCTCAAAAAGCGAGGCCTCATGCCCGGTTTAACCTTCAGTAATGAACTCATT 45303 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 | || ||||||||||| || || | || ||||||||||| Sbjct 45302 AGTCGAGATGAGGGTCTGCACACGGATTTCTCTTGCATGCTGTTCAAG 45255 >seq4653 Length=38373 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||| | || ||||||||||| || |||| || ||||| | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | ||||| | || | ||||||| || ||||| |||||||| | || || Sbjct 8771 GATACCATCGAAAACG-TGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCA 8713 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| || || | || || || ||| |||| || | ||||| || || ||||| Sbjct 8712 ACAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAA 8653 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| |||||||| | ||||| ||||| ||| Sbjct 8652 CATACAGAAGGAATCTACGCTACATCTCGTG 8622 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||| | || || ||||| || || | || || ||||| | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || ||||| | |||| ||||| | || || || || ||||| |||| || Sbjct 9227 GATACGATTGAAAACG-TGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCA 9169 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||||||| || | || ||||| ||||| || || | ||||| | ||| || || Sbjct 9168 GCAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAA 9109 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| || ||| | |||||||| || ||| | || ||| | || ||| Sbjct 9108 CATCCAAAAAGAGTCTACGCTGCACCTGGTGCTCCGTTTGCGAGGTGGC 9060 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| || || ||| |||| || ||||||| | Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | | |||| ||||| | || || || || ||||| | || || Sbjct 9455 GACACGATTGAGAATG-TGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCA 9397 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || || || | || || | ||||| | |||||||| Sbjct 9396 GCAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAA 9337 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| |||||||| |||| ||||||| || ||||| Sbjct 9336 CATTCAGAAGGAATCCACATTGCATCTTGTTTTGCG 9301 >seq13344 Length=17380 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || || |||||||| | || || ||| | | Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | || | |||||||| || ||||| || || || | || || Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||||||| | || || ||||| || |||| Sbjct 12007 ATACAGAAGGAGTCTACACTTCATCTCGTTCTGCG 11973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514664804820080