Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq4653 132 7e-26 seq13344 100 4e-16 >seq4653 Length=38373 Score = 132 bits (146), Expect = 7e-26 Identities = 172/238 (72%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| ||||||| | Sbjct 9515 ATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAGC 9456 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || |||||| |||||||| ||||| || || || ||||| Sbjct 9455 GACACGATTGAGAATGTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCAG 9396 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | | ||||| || ||||| |||||||||||| |||| || || ||| || || Sbjct 9395 CAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAAC 9336 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || ||||| || |||||| | ||||| || | || ||||| || ||| || Sbjct 9335 ATTCAGAAGGAATCCACATTGCATCTTGTTTTGCGGCTTCGCGGTGGCATGCAAATTT 9278 Score = 111 bits (122), Expect = 2e-19 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || |||||||| || ||| | || ||||||| | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | ||| |||||||| ||||||||||| || || || |||||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| |||| || ||||| || || || || || ||| |||| ||| | ||||| || Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT--ATTAA 124771 || || || ||||| || | ||| | || | ||| | || |||||| ||||| Sbjct 8651 ATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGGTTAATTAA 8597 >seq13344 Length=17380 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | ||||| | || || || || || || | ||| | ||| | Sbjct 12190 ACGATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCT 12131 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || ||| ||||| |||||||||||||||||||| || || |||||| Sbjct 12130 TCGGACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGAT 12071 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 ||||| | || ||||| || ||||| || | || || ||||||| | || || Sbjct 12070 CAACAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTAC 12011 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || || || || || || | ||| | ||| | ||| | ||||||||||||| Sbjct 12010 AACATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGGTATTA 11956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754643101014400