Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq4653 100 3e-16 seq21766 98.7 1e-15 seq16514 98.7 1e-15 seq13834 98.7 1e-15 seq4796 98.7 1e-15 seq31203 84.2 2e-11 seq13344 84.2 2e-11 >seq4653 Length=38373 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| |||||||| | || ||||| || ||||||||||||| | ||| || | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| ||||||||||||||||| | || | || ||||| Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || ||| | | | | || || || | ||| || || | ||| || Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || || || ||||| || ||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || |||||||||| || || || | || || | |||||||||||| ||| Sbjct 8641 TCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAAT 8700 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || || || || || | || | || || || ||| ||| |||| | ||| | | Sbjct 8701 ATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC-TGAATTTTAGCTTTCACGTT 8759 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | || ||||| | ||| || |||| || ||||||||||| || | |||||| || Sbjct 8760 TTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCAC 8819 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 8820 GAAAATCTGCAT 8831 >seq21766 Length=10411 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 862 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 803 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 802 TACTACCGAGGA 791 >seq16514 Length=14221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 43 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 102 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 103 TACTACCGAGGA 114 >seq13834 Length=16865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 12503 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 12562 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 12563 TACTACCGAGGA 12574 >seq4796 Length=37647 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 8532 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 8473 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 8472 TACTACCGAGGA 8461 >seq31203 Length=6259 Score = 84.2 bits (92), Expect = 2e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||||| || ||||||||||||| || || || ||||||||||||| |||||||||||| Sbjct 1284 TCTCCTCAGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACT 1343 Query 60125 ATAC 60128 |||| Sbjct 1344 ATAC 1347 >seq13344 Length=17380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||| | ||||| || | ||| | ||| |||||| || || ||||| || | Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| |||||||| || || ||||| || || | || Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || || || ||| |||||| ||| | || | | ||||| | ||| || Sbjct 12081 ATTCCTTCTTTATCT-TGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTAC 12139 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||| || || || | ||||| || ||||||||||| Sbjct 12140 CTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571202302819240