Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2508 98.7 9e-16 >seq2508 Length=53929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 209/307 (68%), Gaps = 4/307 (1%) Strand=Plus/Plus Query 16505 ATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGA 16564 || || || ||||| |||| || ||||||||| ||||| |||||||||| || || || Sbjct 45570 ATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGC 45629 Query 16565 AAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGAGTAAAACCTTTCTGCTAA 16623 | ||||||||||| | ||||| | ||||| || || || | || | | || | Sbjct 45630 ATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGC-AG 45688 Query 16624 GTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtt 16683 |||||| || || || ||||| || ||||||||||| || | || || || | Sbjct 45689 ATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTG 45748 Query 16684 tttttC-GTTATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTT 16742 || | || || | | ||| || | | ||| ||||| | |||||| || | Sbjct 45749 GCGCTCTCCCACCTTTAA-TCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCT 45807 Query 16743 CTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAA 16802 | ||||||||||| || || || |||||||| || || |||||| || | || || Sbjct 45808 CAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAA 45867 Query 16803 TAGGAAA 16809 ||||||| Sbjct 45868 TAGGAAA 45874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462014319743800