Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq4653 107 2e-18 seq13344 86.0 5e-12 >seq4653 Length=38373 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||||||||||||||| || |||| | || || | ||| ||||| ||||| Sbjct 9325 TCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAA 9384 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| ||||| || || || || | || ||||| || ||||| ||| || | Sbjct 9385 ATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTC 9444 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | |||| | | || ||||| | |||||| ||||||||||| |||||||||||| Sbjct 9445 TCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACA 9504 Query 45326 AAGATTTGCATGTTGCC 45342 || || ||||| |||| Sbjct 9505 AAAATCTGCATCCTGCC 9521 >seq13344 Length=17380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| |||| || || || ||||| ||||| Sbjct 11996 CTCCTTCTGTATGTTGTAGTCCGAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAA 12055 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | |||||||| || ||||| | || || || || ||||||| || || Sbjct 12056 AATTAGACGCTGTTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATT 12115 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||||| | || ||||| | || || ||||| || |||| ||||| || Sbjct 12116 CTCGATGGTGTCCGAAGGTTCTACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAAC 12175 Query 45325 AAAGATTTGCAT 45336 ||||||||||| Sbjct 12176 GAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394660712162743