Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2508 145 7e-30 seq4653 100 3e-16 seq13344 93.3 4e-14 >seq2508 Length=53929 Score = 145 bits (160), Expect = 7e-30 Identities = 246/353 (70%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 57510 GAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGAC 57569 ||||| ||| | || ||||||| | | ||||| | ||||| ||| | ||| || Sbjct 45913 GAACCTCTTCTCAAACCCAATCCCCTTCGCTTTGTGCTCTTTCCTATTCAGTATAACGAA 45854 Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | ||||||||||||| || || |||||||| || || ||||| || || Sbjct 45853 ATATGGCAATACTACAAAAAGGCAGTGGCCTCCTTTTGGACTGTTGAGGAAGTCGATCTT 45794 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGA--GAAATTTTATTAAAC 57687 || |||||||||| ||||||||| | | |||| | |||| | | || || Sbjct 45793 TCAAAGGATCTGACCGATTGGGA-ACGATTAAAG-GTGGGAGAGCGCCACTTCATATCTT 45736 Query 57688 ACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGAT 57747 |||| |||||||||| ||||| ||| ||||| || ||| ||| || |||| ||| Sbjct 45735 ACGTCCTGGCGTTTTTTGCCGCCAGCGACGGTATCGTCCTCGAAAATCTGCTCGAGCGAT 45676 Query 57748 TTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTG 57807 | ||||| || ||| | | || ||| | |||||||| ||| | ||| | ||| | | Sbjct 45675 TCAGTCAAGAGGTTCAAATTCCTGAAGCGCGCTGCTTTTATGGAATGCAAATTGCCGTGG 45616 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC 57860 | || | ||||| |||||||||| ||||| || || |||||| | || ||| Sbjct 45615 AGAATATCCATTCTGAAATGTATTGTCTACTTATAGACACGTACATCAAAGAC 45563 >seq4653 Length=38373 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| |||||||| || || |||| |||||| | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||||| || ||| | ||| ||| || |||||| | || || || || Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || || || ||||| ||||| || ||||||||||| | || | ||||| ||| Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || ||||| || || ||||| || || | ||| | || ||| Sbjct 8651 ATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGGT 8604 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || || |||||||| || || || || || | || |||||| | Sbjct 9060 CATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACTATTACGTTGGAGGTTGAAGCTAG 9001 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||||| || ||| | || ||| ||||||||| | || || ||||| Sbjct 9000 TGATACTATCGAAAACGTAAAAGCTAAGATCCAGGATAAGGAAGGCATTCCACCAGACCA 8941 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || ||| | ||||| | ||| | ||||| || Sbjct 8940 GCAGCGACTCATTTTCGCAGGAAAGCAGCTTGAAGATGGTCGTACTTTATCTGATTACAA 8881 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || || || ||||| || |||||| ||||| | |||| Sbjct 8880 TATCCAGAAGGAATCTACGCTTCATTTGGTATTGCGACT 8842 >seq13344 Length=17380 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| |||| || || || ||||| | || || ||||| || Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| || || ||||| | || || || || Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||||||||| |||||||| || ||| | |||||| | || | || || ||| Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || || |||||||| || || | ||| | || |||| Sbjct 12007 ATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGGTA 11959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445286738637360