Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2508 161 1e-34 >seq2508 Length=53929 Score = 161 bits (178), Expect = 1e-34 Identities = 434/661 (66%), Gaps = 41/661 (6%) Strand=Plus/Plus Query 33570 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTA 33629 || |||| || || | |||||| |||||||||||| |||| |||||| | ||| ||| Sbjct 45256 TTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTA 45315 Query 33630 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33689 || || | |||||||| ||||| |||||||| ||||||||||| | |||||| | Sbjct 45316 CTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTT 45375 Query 33690 CCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-- 33747 || || || || | || || ||||| ||| |||| | |||||||| ||| | || Sbjct 45376 CCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGAC 45435 Query 33748 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33805 || ||||| ||||| ||| ||||||| | |||||| || |||| | | || Sbjct 45436 TTCG-TGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACAC-ATTCTAGGT 45493 Query 33806 TTC-TATGGCATTAAAGA--------------GAT---------AGtt-----ttt---- 33832 ||| ||| |||||||| | ||| |||| ||| Sbjct 45494 TTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCG 45553 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33892 ||| ||| ||||| | || || || || | |||| ||||||||| ||||| || || Sbjct 45554 TTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 33893 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 33952 || | ||| || || | ||| || || || | || || | ||| || || ||| || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 33953 AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATAC 34012 ||||| || | |||||| || || || || ||||| ||||||||||||| || Sbjct 45674 GAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGAC 45733 Query 34013 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 34072 | ||| || | || | ||| | | |||||| | | ||| || || Sbjct 45734 GTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGA 45793 Query 34073 TATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCAGA 34131 | ||| ||||| || || |||||||| || ||| |||||||||| || |||| ||| | Sbjct 45794 AAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCATA 45852 Query 34132 TGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGGATAGGTT 34191 | || | ||| || || || || | ||||| | | ||||| ||| || | ||||| Sbjct 45853 TTTCGTTATACTGAATAGGAAAGAGCACAAAGCGAAGGGGATTGGGTTTGAGAAGAGGTT 45912 Query 34192 C 34192 | Sbjct 45913 C 45913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629139892644240