Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4653 127 2e-24 seq13344 118 1e-21 seq18034 93.3 4e-14 >seq4653 Length=38373 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| ||||| | || | ||| | ||||||||||||||| |||||||||||| Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| || |||||||| || |||||| | ||||| ||||||||||| || || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || |||||| || | | ||| | || || | | ||||| Sbjct 9180 GATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCAC 9239 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || || || ||||||||||| || || |||||||| Sbjct 9240 TTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 |||||| || || || ||||| ||||| | ||||| ||||| | ||| ||||| Sbjct 8634 CGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACC 8693 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 |||| | ||||| ||||| ||||| ||||| ||||||||||| || ||| |||| | || Sbjct 8694 AGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATC-CTGAATTTTAGCTT 8752 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | ||| | || ||| | | || || || | || | || ||||| ||||||| Sbjct 8753 TCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACG 8812 Query 139746 TTTTTACGAATATTTGCAT 139764 | || ||||| || ||||| Sbjct 8813 TCTTCACGAAAATCTGCAT 8831 >seq13344 Length=17380 Score = 118 bits (130), Expect = 1e-21 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||||| ||| | |||| |||||||| || || ||||| || || Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | || |||| |||||||||||| || ||||| | || ||||| || ||||| |||| Sbjct 12021 AGCGT--TCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAG 12078 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || |||||||| || ||| |||||| ||||| | || | ||||| | || || Sbjct 12079 GAATTCCTTCTTTATC-TTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCT 12137 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || | ||||| || ||||| || || ||||| |||||||| Sbjct 12138 ACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq18034 Length=13003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 153629 GACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTAT 153688 ||| | ||| ||||||| |||||||||||| |||| || || | | ||| | || || Sbjct 8878 GACAGAAATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAAT 8937 Query 153689 TTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGATTGCTTTTGCGGT 153747 ||| | |||| ||| ||||| || ||| | | || | || ||| ||||| ||||||| Sbjct 8938 TTCAGTGCACAGATTACTGCACTTGATC-GTTCCCAGGTTCTGTTGGTTGCTCTTGCGGT 8996 Query 153748 TACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 | || ||||||||||| |||||| | || | || ||||| |||| || ||||| Sbjct 8997 TGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAAT 9054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495530216533600