Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2508 161 1e-34 seq18034 104 3e-17 >seq2508 Length=53929 Score = 161 bits (178), Expect = 1e-34 Identities = 428/648 (66%), Gaps = 43/648 (7%) Strand=Plus/Plus Query 49948 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 50007 || |||| || || | |||||| |||||||||||| |||| |||||| ||||| || Sbjct 45256 TTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTA 45315 Query 50008 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC 50067 || || | |||||||| ||||| |||||||| ||||||||||| | || || Sbjct 45316 CTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTT 45375 Query 50068 CCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-- 50125 || || || || | || || ||||| ||| |||| || |||||||| ||| | ||| Sbjct 45376 CCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGAC 45435 Query 50126 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 50183 || ||||| ||||| ||| ||||||| | |||||| || |||| | | || Sbjct 45436 TTCG-TGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACAC-ATTCTAGGT 45493 Query 50184 TTC-TATGGCATTAAAGA--------------GAT---------AGtt-----ttt---- 50210 ||| ||| |||||||| | ||| |||| ||| Sbjct 45494 TTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCG 45553 Query 50211 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 50270 ||| ||| ||||| | || || || || | |||| ||||||||| ||||| || || Sbjct 45554 TTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 50271 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACA 50330 || | ||| || || | ||| || || || | || || | ||| || || ||| || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 50331 AAATCGTTC-AGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 50389 ||||| || ||| | |||||| || || ||||| ||||| ||||||||||||| | Sbjct 45674 GAATCGCTCGAGC-AGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGA 45732 Query 50390 CATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 50449 | | ||| || || || ||| | | |||||| | | ||| || | Sbjct 45733 CGTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTG 45792 Query 50450 ATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT-CCAG 50508 | | ||| ||||| || || |||||||| || ||| |||||||||| || |||| ||| Sbjct 45793 AAAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCAT 45851 Query 50509 ATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 || || | ||| || || || || | ||||| | | ||||| ||| Sbjct 45852 ATTTCGTTATACTGAATAGGAAAGAGCACAAAGCGAAGGGGATTGGGT 45899 >seq18034 Length=13003 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||||||||| || ||||| ||||| || ||||| | || ||||| || ||||| | Sbjct 8936 ATTTCAGTGCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGG 8995 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || || ||||| ||||| ||||||||| |||| |||||||| |||| || ||||| Sbjct 8996 TTGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATG 9055 Query 79789 GC 79790 || Sbjct 9056 GC 9057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717495915836120