Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2508 141 9e-29 >seq2508 Length=53929 Score = 141 bits (156), Expect = 9e-29 Identities = 394/603 (65%), Gaps = 36/603 (6%) Strand=Plus/Plus Query 13887 TGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCT 13946 || || |||||||||| |||||| ||||| || || ||||| || ||||| | ||| Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 13947 CGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCA 14006 || ||||| | ||||||||| ||||| || || || || |||| ||||||||||| Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 14007 GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCC 14066 ||| | || | | || || ||||| | | || ||| ||||| ||| |||| Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCC 45462 Query 14067 CATTCAGAtttttttttAATAAAATCCATTGTTTCA-ATAGCATTAAATAAATATTCC-- 14123 |||| | || || | | | || | ||||| ||||||||||| || | || Sbjct 45463 CATTGGGCCTTGCGTTCCACACATTCTAG-GTTTCGTATAGCATTAAACAAGAAGTCACT 45521 Query 14124 ------------------TTCTC--TTTA--GTACTTGAA--------ATGTATGTATCA 14153 || || |||| || ||| | ||||| || || Sbjct 45522 GAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGTGTCT 45581 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||||| | |||||||||||| || || || |||| || || || | ||||||||| Sbjct 45582 ATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATAAAAG 45641 Query 14214 CATCTAGCTTCCGACCATTGTACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAAC 14272 || | ||||| | ||| || || || | |||| ||| || |||||| || Sbjct 45642 CAGCGCGCTTCAGGAATTTGAACCTCTTGACT-GAATCGCTCGAGCAGATTTTCGAGGAC 45700 Query 14273 TATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14332 ||||| || || || |||||||| |||| | || || |||| ||||| | Sbjct 45701 GATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCCCAC 45760 Query 14333 GTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 || | | || |||||||| | |||||| |||||||| ||||| ||||| |||||||| Sbjct 45761 CTTTAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGTCCAAAA 45820 Query 14393 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14452 || || || ||||| || | ||||||||| ||||| |||||||| | || Sbjct 45821 GGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAATAGGAAAGAGCAC 45880 Query 14453 AAA 14455 ||| Sbjct 45881 AAA 45883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479211794682200