Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2508 138 1e-27 >seq2508 Length=53929 Score = 138 bits (152), Expect = 1e-27 Identities = 393/603 (65%), Gaps = 36/603 (6%) Strand=Plus/Plus Query 13675 TGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCT 13734 || || |||||||||| |||||| ||||| || || ||||| || ||||| | ||| Sbjct 45283 TGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCT 45342 Query 13735 CGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCA 13794 || ||||| | ||||||||| |||||||| ||| || || |||| ||||||||||| Sbjct 45343 CGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCT 45402 Query 13795 GCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCC 13854 ||| | || | |||| || ||||| | | || ||| ||||| ||| |||| Sbjct 45403 GCATAGGCCACCAGTCTCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCC 45462 Query 13855 CATTCAGAtttttttttAATAAAATCCATTGTTTCG-ATTGCATTGAATAA-ATGTTCCT 13912 |||| | || || | | | || | |||||| || ||||| || || | || || Sbjct 45463 CATTGGGCCTTGCGTTCCACACATTCTAG-GTTTCGTATAGCATTAAACAAGAAGTCACT 45521 Query 13913 ---------------------TCTCTTTA--GTACTTGAA--------ATGTATGTATCA 13941 || |||| || ||| | ||||| || || Sbjct 45522 GAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGTGTCT 45581 Query 13942 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||||| | |||||||||||| || || || || | || || || | |||||||| Sbjct 45582 ATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATAAAAG 45641 Query 14002 CATCTAGCTTCTGACCATTGTACCTC-CGAGTAAAATCTTTCTGCCAAGTTTTCATTAAC 14060 || | ||||| | ||| ||||| || | |||| || || ||||| || Sbjct 45642 CAGCGCGCTTCAGGAATTTGAACCTCTTGACT-GAATCGCTCGAGCAGATTTTCGAGGAC 45700 Query 14061 AATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT 14120 ||||| || || || |||||||| |||| | || || |||| ||||| | Sbjct 45701 GATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCCCAC 45760 Query 14121 GTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || | | || |||||||| | |||||| |||||||| ||||| ||||| |||||||| Sbjct 45761 CTTTAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGTCCAAAA 45820 Query 14181 ACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTAC 14240 || || || ||||| || | ||||||||| ||||| |||||||| | || Sbjct 45821 GGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAATAGGAAAGAGCAC 45880 Query 14241 AAA 14243 ||| Sbjct 45881 AAA 45883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478073820504120