Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4653 98.7 8e-16 >seq4653 Length=38373 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || || |||| || |||||||| | || ||||| || | ||||||||| || Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || || | || || || || ||||| | |||||| || || | || Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | || || | ||| || || Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACC 9012 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| ||||| |||||||| ||||||||||||||||| ||||| Sbjct 9013 TCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| ||||| | || |||||||||||||| || | || || | || ||||| ||||| Sbjct 9096 CTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAA 9155 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||| ||| || ||||| | || | |||||| || || ||| | || || | Sbjct 9156 AATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTTCACGTT 9215 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || | || || || || | ||||| ||||| || || | ||||| || Sbjct 9216 TTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGAC 9275 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 9276 AAAAATTTGCAT 9287 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||| || ||||| || || | || || ||||| || || || ||| Sbjct 9325 TCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAA 9384 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||| | ||| | ||||| || || || | | || || | Sbjct 9385 ATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTC 9444 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||||||| || || || || | || || || || || || ||||| |||||| Sbjct 9445 TCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACA 9504 Query 43099 AAAATTTGCAT 43109 ||||| ||||| Sbjct 9505 AAAATCTGCAT 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380969491208814