Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2508 167 3e-36 seq18034 111 2e-19 >seq2508 Length=53929 Score = 167 bits (184), Expect = 3e-36 Identities = 429/648 (66%), Gaps = 43/648 (7%) Strand=Plus/Plus Query 42053 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTG 42112 || |||| || || | |||||| ||||||||||||||||| |||||| | ||| || Sbjct 45256 TTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTA 45315 Query 42113 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT 42172 || || | |||||||| ||||| |||||||| ||||||||||| | || || | Sbjct 45316 CTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTT 45375 Query 42173 CCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA 42232 || || || || | || || ||||| ||| |||| | |||||||| ||| || | | Sbjct 45376 CCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCA-AAGGTGGA 45434 Query 42233 C----TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 42288 | ||||| ||||| ||| ||||||| | |||||| || |||| | | || Sbjct 45435 CTTCGTGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACAC-ATTCTAGGT 45493 Query 42289 TTC-TATGGCATTAAAGA--------------GAT---------AGtt-----ttt---- 42315 ||| ||| |||||||| | ||| |||| ||| Sbjct 45494 TTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCG 45553 Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375 ||| ||| ||||| | || || || || | |||| ||||||||| ||||| || || Sbjct 45554 TTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435 || | ||| || || | ||| || || || | || || | || || || ||| || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 42436 AAATCGTTC-AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 42494 ||||| || ||| | ||||||| || || ||||| ||||| ||||||||||||| | Sbjct 45674 GAATCGCTCGAGC-AGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGA 45732 Query 42495 CATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAG 42554 | | ||| || | || || ||||| | |||||| | | ||| || | Sbjct 45733 CGTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTG 45792 Query 42555 ATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT-CCAG 42613 | | ||| ||||| || || |||||||| || || |||||||||| || |||| ||| Sbjct 45793 AAAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCAT 45851 Query 42614 ATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 || || | ||| ||||| || || | ||||| | | ||||| ||| Sbjct 45852 ATTTCGTTATACTGAATAGGAAAGAGCACAAAGCGAAGGGGATTGGGT 45899 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| ||||| | ||| || || || |||||||| ||||| ||||||||||| ||| Sbjct 44928 GACATCACTCCAGCTCGTTGATAATCTCCAACACGTTTCTCGAAGAAATTAGTCTTGCCT 44987 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAA 41866 || || |||||||| |||||||| || ||||| || | | |||||| Sbjct 44988 TCTAAAGATATATTCTCCATGAAGTCGAACGGGTTTTCAGCGTTATAA 45035 >seq18034 Length=13003 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGT 71759 || ||| |||||||| |||||||| | || | | ||| | | ||||||||| Sbjct 8884 AATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGT 8943 Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819 ||| |||||||| |||||||| ||||| | || ||||| || ||||| ||| || || Sbjct 8944 GCACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGC 9003 Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 ||||| ||||| || |||||| |||| |||||||| |||| || ||||| || Sbjct 9004 GTCCTTGTAAAGCATGAACGGATTACCCGTTTCAATTTGAGCTTGAATAATGGC 9057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670417029053080