Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13344 138 1e-27 seq4653 113 5e-20 seq18034 96.9 4e-15 >seq13344 Length=17380 Score = 138 bits (152), Expect = 1e-27 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||||| ||| | ||||| |||||| || || ||||||||||| | | Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGT--CCG 12018 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | |||| ||||||||| || || ||||| | || ||||| || ||||| |||| Sbjct 12019 AGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAG 12078 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || ||||||| ||||| | || | ||||||| ||||||| Sbjct 12079 GAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTA 12138 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| || | ||||| || ||||| || || ||||| |||||||| Sbjct 12139 CCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| || |||||||||||||| | ||||| ||||| | || |||||| Sbjct 8635 GTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCA 8694 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| ||||| ||||| ||||| ||||||||||| || |||||| ||| Sbjct 8695 GCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTTTC 8754 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || || | | ||| ||||| | ||| | || ||||| ||||| || Sbjct 8755 ACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTC 8814 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 8815 TTCACGAAAATCTGCAT 8831 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| ||||| ||||| | || | || | ||||| |||||||| ||||| |||||| Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || ||||| || ||||| || || |||||| | ||||| ||||||||||| || || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||||| || | | ||| | ||| || | | ||| || Sbjct 9180 GATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCAC 9239 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || || || ||||| ||||| || || |||||||| Sbjct 9240 TTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 >seq18034 Length=13003 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 157051 GACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTAT 157110 ||| | ||| ||||| ||||| || |||||| |||| || || | | ||| | || || Sbjct 8878 GACAGAAATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAAT 8937 Query 157111 TTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTTGCGGT 157169 ||| | |||| ||| ||||| || ||| ||| || | || ||| ||||| ||||||| Sbjct 8938 TTCAGTGCACAGATTACTGCACTTGATCGTTCC-CAGGTTCTGTTGGTTGCTCTTGCGGT 8996 Query 157170 TGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTC 157209 |||| ||||||||||| | |||| |||| | || ||||| Sbjct 8997 TGCATGCGTCCTTGTAAAGCATGAACGGATTACCCGTTTC 9036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506468833492560