Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2508 145 1e-29 seq18034 87.8 3e-12 seq2617 84.2 3e-11 >seq2508 Length=53929 Score = 145 bits (160), Expect = 1e-29 Identities = 511/794 (64%), Gaps = 52/794 (7%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || ||||| || |||| | || || ||| || ||||||||||| |||||||||| Sbjct 45877 CTCTTTCCTATTCAGTATAACGAAATATGGCAATACTACAAAAAGGCAGTGGCCTCCTTT 45818 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| || || || |||||||| || ||||| ||| ||||||||| || || | Sbjct 45817 TGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTGACCGATTGGGA---ACGATTAAAG 45761 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 | ||||| | || ||||| || | |||| || ||||||| | ||| || ||| Sbjct 45760 GTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTTTTTGCCGCCAGCGACGGTATC 45701 Query 125175 GTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGC 125234 ||| ||| |||||| | |||||| ||||||| | ||||| || | | ||| Sbjct 45700 GTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTTCAAATTCCTGAAGCGCGCTGC 45641 Query 125235 TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATT 125294 ||||| ||| | ||||| | ||||| | || || |||||||| | | ||| || Sbjct 45640 TTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCTGAAATGTATTGTCTACTTATA 45581 Query 125295 GACATGTACATTCGCGATCC----GCAACGTAAA-----CACATGCT-CTTTAACG--CA 125342 |||| |||||| || || | | ||||| || |||| || || || || Sbjct 45580 GACACGTACATCAAAGACCCTAAAGAACGGTAAATTGATAACTTGCTGCTCTATCGTTCA 45521 Query 125343 AT--CGACACGGTGCCGTCTATACGTAA------------------AAAGGCTCAATGGG 125382 | | | | | ||||||| || ||||| ||||||| Sbjct 45520 GTGACTTCTTGTTTAATGCTATACGAAACCTAGAATGTGTGGAACGCAAGGCCCAATGGG 45461 Query 125383 TGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCG 125442 | ||||| | |||| ||||| | | | || ||||||||||| | || | Sbjct 45460 CTCTAAATTGGATTGGTGACACGAAGTCCACCTTTGGGGAGAGACTGGTGGCCTATGCAG 45401 Query 125443 CCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCG 125502 | || |||||| | || || ||||| || || || || || ||||||||||| ||||| | Sbjct 45400 CAGTTGAGGGCGTATTTTTCTCGGGAAGCTTCGCTGCGATATTTTGGCTCAAAAAGCGAG 45341 Query 125503 GACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACT 125562 | ||||||||||| | || |||||| || | || |||||| ||||| || ||| Sbjct 45340 GCCTCATGCCCGGTTTAACCTTCAGTAATGAACTCATTAGTCGAGATGAGGGTCTGCACA 45281 Query 125563 GTGACTTTGCCATTC-TACTGTTTCGCAACTATCTGCGTCCCGAG---TGCAGATCCAGC 125618 || ||| | | | | ||||| ||| || | | | || | |||| ||| Sbjct 45280 CGGA-TTTCTCTTGCATGCTGTT---CAAGTACATAGTTAACAAGCCTTCCAGA--GAGC 45227 Query 125619 GATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACC 125678 | || ||| ||| | | ||||||||| | ||||| | || | Sbjct 45226 G-------GGCTATCGCGATTATGAAGGATGCCGTGGAAGTGGAACACAAATTCTTCGGG 45174 Query 125679 GAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAG 125738 || | || || |||||| |||| ||||||||||||||| | |||||| ||||| | ||| Sbjct 45173 GACGCTCTTCCTGTCAGCCTGATAGGCATGAACTGCAAGTTGATGTGCCAGTACGTTGAG 45114 Query 125739 TTTGTGGCAGATCG 125752 ||||| || || || Sbjct 45113 TTTGTCGCTGACCG 45100 >seq18034 Length=13003 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 97200 GCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGC 97259 ||||| | || || || | ||||| ||| || |||||||| | || ||||| ||| Sbjct 9045 GCTCAAATTGAAACGGGTAATCCGTTCATGCTTTACAAGGACGCATGCAACCGCAAGAGC 8986 Query 97260 AACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||||| || |||| || |||||| || ||||||||||| |||||||| ||||| Sbjct 8985 AACCAACAGAACCTGGGAACGATCAAGTGCAGTAATCTGTGCACTGAAATTGTGGAGTAT 8926 Query 97320 GCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 || || || || | || |||||| |||||| || Sbjct 8925 AGTTCACCAGAAGAAATTGCCGTTTGCAATCTGGCGTC 8888 >seq2617 Length=52584 Score = 84.2 bits (92), Expect = 3e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || ||||||||||| || || ||||| |||||| | |||| |||| | | ||||| ||| Sbjct 32283 GGTGATCTGGGGCCTGTCTATGGATTTCAGTGGCGTCACTGGGGCGCTGATTATGTTGAC 32224 Query 70127 TGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTG 70165 ||| |||| || || | || |||||||||||||| ||| Sbjct 32223 TGCAAGACGGATTACACCGGACAGGGTGTTGATCAGTTG 32185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740261792511080