Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq4653 105 5e-18 seq13344 102 6e-17 >seq4653 Length=38373 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || || || |||||||||||||| || | | | ||||| || || Sbjct 8628 ATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTG 8687 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| |||||| |||||||| || || || |||||||| || |||||| Sbjct 8688 CTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTT 8747 Query 15280 -GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || || |||| |||||||||||| ||| || || | ||||||||||| || | Sbjct 8748 AGCT-TTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAG 8806 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| || || || ||||| ||||| Sbjct 8807 TCAACGTCTTCACGAAAATCTGCAT 8831 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || |||||||| || || || || || || |||||||| || | | | | ||| Sbjct 8848 AATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCATCT 8907 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | || || || ||| | || | || || ||||| |||||| ||||| || || Sbjct 8908 TCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCC 8967 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 || || ||| ||||| |||| || ||||| ||| ||| || || || ||||| || Sbjct 8968 TGGATCTTAGCT-TTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATAGT 9026 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||||||||| |||||||| ||||| Sbjct 9027 CTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||| ||| | | || | || || || || |||||||| ||||| |||||| Sbjct 9059 TGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGG 9118 Query 15195 TTAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTT 15252 | ||| || | || || | || |||||||| | |||| ||||| || || Sbjct 9119 --ACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGG 9176 Query 15253 TGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTC 15312 ||| || ||||| || || ||||| ||| || |||| || ||||| || ||| Sbjct 9177 TGGGATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTC 9236 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || || ||||||||||||| ||||| |||||||||||||| Sbjct 9237 CACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 >seq13344 Length=17380 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | ||| | |||||| || || || || ||||||||||| || Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || ||| ||||||| | || || |||||| | || | ||| ||||| || ||| Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 15257 ATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||||||||||| || || ||||||| |||||| | || ||||| || | |||||| Sbjct 12081 ATTCCTTCTTTATCTTGAATTTTTGCT-TTTACATTCTCGATGGTGTCCGAAGGTTCTAC 12139 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || |||| || || || || |||||||| Sbjct 12140 CTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361799224559103