Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq4653 107 1e-18 >seq4653 Length=38373 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33154 CCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG 33213 |||||| || | ||||||||| || || || || || ||||| || ||||| || | Sbjct 9300 CCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACC 9359 Query 33214 GTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT 33273 || || |||||||||||| || || ||||| ||||| || | || || ||||| || Sbjct 9360 ATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTT 9419 Query 33274 ---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGT 33330 || | ||||| || || | | |||||||||| ||| || ||| || || || Sbjct 9420 ATCTTGTATTTTCGCC---TTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGT 9476 Query 33331 TATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||||||||| || || ||||| ||||| Sbjct 9477 AATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Score = 100 bits (110), Expect = 2e-16 Identities = 168/241 (70%), Gaps = 8/241 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || |||| || || | ||||| |||| || ||||||||||| || || Sbjct 9051 AATCTGCATGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTT 9110 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||| ||||| || | || || | ||||| ||| ||| || | |||||||| Sbjct 9111 ATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTG 9170 Query 33253 GTCCGTGGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTC 33309 |||| || || ||||| || || | | | ||| || || ||| |||||| || Sbjct 9171 ATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCC---TTCACGTTTTCAATCGTATC 9227 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | || || ||||||||||| ||||| || || | ||||| || ||||||||||| Sbjct 9228 ACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Query 33370 G 33370 | Sbjct 9288 G 9288 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||| |||||||| | || || || || || |||||||||||||| ||| | | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || || | |||||||| || || | || |||||||| | || |||||||| || Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || || || | | || ||| |||| || || Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || |||||||| || ||||| |||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATG 9060 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| | ||| | || || || || ||||| ||||||||||| | || | || || Sbjct 8622 CACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTC 8681 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 ||| ||||| ||| |||||| | ||||| || || | || ||||||||||| || Sbjct 8682 CAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTG 8741 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 ||| ||| || ||| || || ||| | | || ||| || ||||| || ||||| Sbjct 8742 AATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTT 8801 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | || || |||||||| ||||| Sbjct 8802 GCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318443158764534