Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4653 100 2e-16 >seq4653 Length=38373 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||| ||| | | ||||| || ||||| ||||||||| || ||||||||| Sbjct 9061 CCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGAC 9120 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || |||| || | || || || ||||| |||| |||||||| ||| | || Sbjct 9121 AATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGG 9180 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| |||||| ||||| || || | ||| ||||| | ||||| Sbjct 9181 ATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACT 9240 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || ||||||||||| || || || || ||||| ||||||||| Sbjct 9241 TCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||| | ||||||||| || || || || || ||||| | | || |||| || Sbjct 8622 CACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTC 8681 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| || || || |||||||||| |||||| || || |||| | ||||||||||| Sbjct 8682 CAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTG 8741 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGC-TCCACATCGACCGTAATTGTTT 44090 |||||| ||| || | | | ||||| || || || || |||| ||||| |||| Sbjct 8742 AATTTTAGCTTTCACGTTTTCGATGGTATC-GCTAGCTTCAACTTCGAGAGTAATGGTTT 8800 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || |||||||| || || ||||| Sbjct 8801 TGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354405389848284