Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2508 114 1e-20 >seq2508 Length=53929 Score = 114 bits (126), Expect = 1e-20 Identities = 504/792 (64%), Gaps = 58/792 (7%) Strand=Plus/Plus Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||| | |||||| |||||||| | |||||| ||| || | |||||||| ||||| | Sbjct 45096 CAAGCGGTCAGCGACAAACTCAACGTACTGGCACATCAACTTGCAGTTCATGCCTATCAG 45155 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||||| | ||| || || || || | ||| | || || || || | | || Sbjct 45156 GCTGACAGGAAGAGCGTCCCCGAAGAATTTGTGTTCCACTTCCACGGCATCCTTCATAAT 45215 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG--ATG--CTTAAACATCATACATG 13154 | | | || ||||| ||| | ||| || ||| ||| |||| ||| || | Sbjct 45216 CGCGAT-AGCCCGCTCTCT---GGAAGGCTTGTTAACTATGTACTTGAACAGCATGCAAG 45271 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 ||||| ||||| || ||||||| ||| || || || || || |||| ||| | Sbjct 45272 AGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGG 45331 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTC 13274 |||| || ||||| ||||| | ||||||||| ||||| || ||||| ||||||| | Sbjct 45332 GCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGC 45391 Query 13275 CTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT--ACTATTTTTACTCTCTAT 13332 | |||||||||||| | || | || || || ||| | || ||| | | | | | || Sbjct 45392 CCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGACT-TCGTGTCAC-CAAT 45449 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| ||| ||||| | || || ||| || || | | ||| ||| || ||||| Sbjct 45450 CCAATTTAGAGCCCATTGGGCCTTGCGTTCCACACATTCTAGGTTTCGTATAGCATTAAA 45509 Query 13393 TAA--------------AT----------------AAttt--ttttCCTTACTGTCTAAA 13420 || || ||||| ||| ||| |||| Sbjct 45510 CAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTG 45569 Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || || ||||| | || | ||||||||| ||||| ||||| |||| || ||||| Sbjct 45570 ATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGC 45629 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCTAA 13539 | |||||||| || | || || | | ||||| || || | |||| || | Sbjct 45630 ATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT-GAATCGCTCGAGCAG 45688 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| || || ||||| || || |||||||| || || | | ||| | || Sbjct 45689 ATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGA----CGTAAGATATGA 45744 Query 13600 tttttCGTTTTCTGACAACTTTAA------CCAATCTGGAAAATCTTTTGATAAATCTAC 13653 | || ||| || |||||| |||||| | | ||| ||||| | ||| || Sbjct 45745 AGTGGCG--CTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGAC 45802 Query 13654 CTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATA 13713 |||||||| |||||||| || || || ||||| || || |||||| || ||||| Sbjct 45803 TTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATA 45862 Query 13714 AACAATGGGAAA 13725 ||| ||||| Sbjct 45863 CTGAATAGGAAA 45874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430530240606366