Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13344 194 4e-44 seq4653 172 1e-37 seq2508 152 1e-31 >seq13344 Length=17380 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | |||||| || ||||| || || ||||| Sbjct 11958 ATACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCC 12017 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| ||||||||| || || |||||||| |||||||| | ||||||||||||| Sbjct 12018 GAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGA 12077 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| |||||||||||||| || | ||| || ||||||| Sbjct 12078 GGAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCT 12137 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| | || || || || || ||||| Sbjct 12138 ACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 104350 TACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTC 104409 ||| | ||| | |||||||| ||||| ||||| || ||||||| ||| | ||| ||||| Sbjct 8850 TACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCATCTTC 8909 Query 104410 TAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTG 104469 || || ||||| || ||||| || | ||| || || || || || ||||| |||||||| Sbjct 8910 AAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCCTG 8969 Query 104470 AATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| |||||||| ||||| | ||||| |||| ||| ||||| | ||||||||||| Sbjct 8970 GATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATAGTCTT 9029 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| |||||||| Sbjct 9030 TCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||||| |||||||| ||||| || || || ||||| || || | ||| ||| Sbjct 8620 AGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCT 8679 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || || |||||||| || |||| |||||||| ||||| || |||||||||||| Sbjct 8680 TCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC 8739 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||| || ||||| | ||||||||||| ||| || || || ||||| || Sbjct 8740 TGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTT 8799 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || |||||||| Sbjct 8800 TTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| ||||| || || ||||| || || | || | ||| || || || || || ||| Sbjct 9091 GTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCA 9150 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | || ||||| || || || ||||| ||||| || || || || || Sbjct 9151 GCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTTC 9210 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || ||||| | ||||| || | ||| || || || || || || ||||| || | ||| Sbjct 9211 ACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTT 9270 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 9271 TTGACAAAAATTTGCAT 9287 >seq2508 Length=53929 Score = 152 bits (168), Expect = 1e-31 Identities = 222/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 |||||| | ||||| || ||| || || |||||| |||||| |||| || || Sbjct 45883 TTTGTGCTCTTTCCTATTCAGTATAACGAAATATGGCAATACTACAAAAAGGCAGTGGCC 45824 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 || ||||||||||| || ||||| ||||| || | || | | |||||| || ||| Sbjct 45823 TCCTTTTGGACTGTTGAGGAAGTCGATCTTTCAAAGGATCTGACCGATTGGGAACGATTA 45764 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 || | ||| | || |||||||| | || ||||||||||| | || || ||| Sbjct 45763 AAGGTGGGAGAGCGCCACTTCATATCTTACGTCCTGGCGTTTTTTGCCGCCAGCGACGGT 45704 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 ||||| ||||||||| | ||| ||| |||||||||| || ||||||||||| | Sbjct 45703 ATCGTCCTCGAAAATCTGCTCGAGCGATTCAGTCAAGAGGTTCAAATTCCTGAAGCGCGC 45644 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || ||||| ||| | || || || | || ||||| ||||| || ||||| ||||| | Sbjct 45643 TGCTTTTATGGAATGCAAATTGCCGTGGAGAATATCCATTCTGAAATGTATTGTCTACTT 45584 Query 269003 ATAGATACTTATAT 269016 ||||| || || || Sbjct 45583 ATAGACACGTACAT 45570 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 269486 TATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAAT 269545 ||||||| |||||| ||||| || |||||||||||||| |||||||| ||| ||||| Sbjct 45034 TATAACGCTGAAAACCCGTTCGACTTCATGGAGAATATATCTTTAGAAGGCAAGACTAAT 44975 Query 269546 TTCTTCGAGAAGCGGGT 269562 ||||||||||| || || Sbjct 44974 TTCTTCGAGAAACGTGT 44958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150128478447764