Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq12404 89.7 3e-13 seq31535 87.8 9e-13 seq309 82.4 4e-11 >seq12404 Length=18548 Score = 89.7 bits (98), Expect = 3e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 17325 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 17384 Query 11528 CCGTCG 11533 ||| || Sbjct 17385 CCGACG 17390 >seq31535 Length=6142 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| ||||||||||||| ||| Sbjct 3184 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTACCGGG 3125 Query 11528 CC 11529 || Sbjct 3124 CC 3123 >seq309 Length=124682 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||| ||||||| ||||||||||||| ||| Sbjct 106201 GGATCGAACCCACGACATTCGCGTTATTAGCACAACGCTCTAACCAACTGAGCTACCGGG 106142 Query 11528 CC 11529 || Sbjct 106141 CC 106140 Lambda K H 0.641 0.410 0.924 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261216860021308