Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq4653 98.7 9e-16 >seq4653 Length=38373 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 |||||| ||||| || | ||||||||||| || | || ||||| ||| || || Sbjct 8844 TCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAG--ATAAAGTACGA 8901 Query 94852 --ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCT 94909 ||| || ||||| ||||| | || || | || ||||| ||||| ||||| ||||| Sbjct 8902 CCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCC 8961 Query 94910 TTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTG 94969 || || | || || || || ||| ||| ||| ||| || || || | ||| Sbjct 8962 TTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTA 9021 Query 94970 ATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || ||||| || |||||||||||||| |||||||||| Sbjct 9022 ATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATGC 9061 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 ||||||||||| || | ||| ||||| | ||||| || ||| |||| ||| || | Sbjct 8635 GTAGATTCCTTCTGTATGTTGTAATCAG--AAAGTGTGCGACCATCTTCCAACTGCTTAC 8692 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | |||| || | | ||| ||||||||||| || |||||||| || | |||||| || | Sbjct 8693 CAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTT 8752 Query 94929 TGACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 | ||| ||| || || || | || || || | || |||||||| ||||| | Sbjct 8753 TCACGTTTTCGATGGTATC-GCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAAC 8811 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || ||||| || |||||||| Sbjct 8812 GTCTTCACGAAAATCTGCAT 8831 Score = 82.4 bits (90), Expect = 7e-11 Identities = 174/256 (68%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 94757 AACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGAT 94816 |||| ||| |||| ||| || || || | | ||||| || | ||||| || ||| Sbjct 9265 AACGTTTTGACAAAAATTTGCATGCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGAT 9324 Query 94817 TCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAG 94876 ||||| || | ||| || || || ||| |||||| | || ||||| | || Sbjct 9325 TCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAA 9384 Query 94877 ATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCG 94936 || || | ||||||||||| || || ||||| || || | ||||| ||||| || Sbjct 9385 ATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTC 9444 Query 94937 CCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCA 94994 | | ||||| || ||| || || || | || || || || || |||||||| |||| Sbjct 9445 TCAATCGTGTC-GC-TGGCTTCAACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCA 9502 Query 94995 CAAAGATCTGCATGCT 95010 |||| |||||||| || Sbjct 9503 CAAAAATCTGCATCCT 9518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447808821857880