Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq37662 196 8e-46 seq29315 192 9e-45 seq24815 168 1e-37 seq6902 141 1e-29 seq6538 107 3e-19 >seq37662 Length=4496 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || ||||||||||| ||||||||||| |||||| Sbjct 4224 GCAAAGCGCCATCGTAAGGTGCTGCGCGACAACATCCAAGGCATCACCAAGCCGGCTATC 4165 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || |||||||| || ||||| |||| |||||| |||| || |||| | Sbjct 4164 CGTCGTCTGGCCCGCCGTGGTGGTGTGAAGCGCATCTCCGGATTGATCTACGAGGAGACT 4105 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | ||| ||| |||| ||| || || || |||||| Sbjct 4104 CGTGGTGTGTTGAAGGTGTTCTTGGAGAACGTGATCCGTGACGCCGTCACATACACCGAG 4045 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| | ||||| || | |||||||| ||| Sbjct 4044 CACGCCAAGCGAAAGACCGTCACTGCCATGGACGTTGTCTACGCCCTCAAACGTCAGGGC 3985 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || | |||| Sbjct 3984 CGTACTTTGTACGGTTTCGGCGGCTAAT 3957 >seq29315 Length=6922 Score = 192 bits (212), Expect = 9e-45 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| ||||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 2877 CGTGATAACATTCAAGGCATCACCAAACCGGCCATCCGTCGTCTCGCCCGTCGTGGTGGT 2936 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || || ||| |||| || || |||| || || | ||||| |||||||||| | ||| | Sbjct 2937 GTGAAACGTATCTCCGGCCTGATCTACGAGGAAACTCGTGGTGTTTTGAAGGTGTTCTTG 2996 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| || | |||||| | ||| ||||||||||| || || |||||||| || Sbjct 2997 GAGAACGTCATTCGTGATGCCGTTACCTACACCGAGCACGCGAAGCGGAAGACTGTTACT 3056 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| |||||||||| ||||||| || ||||| | | || |||||||| || Sbjct 3057 GCCATGGATGTCGTCTATGCCCTGAAACGCCAGGGCCGCACCTTGTACGGTTTTGGTGGT 3116 Query 16697 TAAT 16700 |||| Sbjct 3117 TAAT 3120 >seq24815 Length=8794 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | || || || ||||||||||| ||||||||||| | |||| Sbjct 3205 GCAAAGCGCCATCGTAAGGTGCTGCGCGACAACATCCAAGGCATCACCAAGCCGGTTATC 3264 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| || |||||||| || ||||| ||| ||||||| ||| || |||| | Sbjct 3265 CGTCGTCTGGCCCGCCGTGGTGGTGTGAAGCGCATCTTTGGATTGATCTGCGAGGAGACT 3324 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| | ||| | ||| ||| |||| ||| || || || |||||| Sbjct 3325 CGTGGTGTGTTGAAGGTGTTCTTGGAGAACGTGATCCGTGACGCCGTCACATACACCGAG 3384 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | || | || || || || |||| | ||||| || || |||||||| ||| Sbjct 3385 CACGCCTAGCGAATAACCGTTACTGCCGTGGACGTTGTCTACGCCTTCAAACGTCAGGGC 3444 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || ||||| || | |||| Sbjct 3445 CGTACTTTGTACGGTTTCGGCGGCTAAT 3472 >seq6902 Length=29669 Score = 141 bits (156), Expect = 1e-29 Identities = 182/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 16442 CATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTG 16501 ||||| | | |||||||||||| || ||||| || || ||||| || || |||||| || Sbjct 13252 CATCGGAAAGTTCTTCGAGATAATATTCAAGGTATAACAAAGCCCGCAATTCGTCGTTTG 13311 Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 || |||||||||||||| |||||| | || || ||| | |||||||| | || | || Sbjct 13312 GCCCGTCGTGGTGGAGTTAAGCGTATTTCCGGTTTGATTTATGAAGAAACACGCGGAGTG 13371 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 ||||| | || || | | ||| || | |||||| | ||| ||||| ||||| ||| Sbjct 13372 TTGAAAGTTTTTCTGGAAAACGTCATTCGTGATGCAGTTACCTACACCGAACACGCGAAA 13431 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATT 16681 || || || || || | |||||| | || ||||| | ||| | ||||| |||| | Sbjct 13432 CGAAAAACAGTGACTGCTATGGATGTTGTTTATGCCCTCAAAAGACAAGGTCGTACTCTA 13491 Query 16682 TATGGTTTTGG 16692 || || ||||| Sbjct 13492 TACGGATTTGG 13502 >seq6538 Length=30887 Score = 107 bits (118), Expect = 3e-19 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 16463 AACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAG 16522 ||||||||||| ||| ||||||| | | || ||| |||| || |||| ||| || ||| Sbjct 2452 AACATCCAAGGTATCTCCAAGCCGGATTTCTTGCGTTTGGCCCGCCGTGATGGTGTAAAG 2393 Query 16523 CGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACC 16582 || |||| |||| | |||| || |||||||||| | | |||||| | ||| | ||| | Sbjct 2392 CGCATCTCCGGATAGATCTACGAGGAGATTCGTGGTATGTTGAAGGTGTTCTTGGAGAAC 2333 Query 16583 GTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATG 16642 | |||| | | || || | | ||||||| | || ||||| ||||| ||||| Sbjct 2332 ATGATCCGTAAAGCCGTCACATGAAGTGAGCACGACCAGCGAAAGACCGTCACTGCCATG 2273 Query 16643 GATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || | ||||| | | |||||||| ||| ||| Sbjct 2272 GACGTTGTCTACGTCCTCAAACGTCAGGGCGGTA 2239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78996493710519