Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2508 163 4e-35 seq18034 111 2e-19 >seq2508 Length=53929 Score = 163 bits (180), Expect = 4e-35 Identities = 424/646 (66%), Gaps = 39/646 (6%) Strand=Plus/Plus Query 33292 TTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTG 33351 || |||| || || | |||||| |||||||||||| |||| |||||| ||||| || Sbjct 45256 TTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTA 45315 Query 33352 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT 33411 || || | |||||||| ||||| |||||||| ||||||||||| | |||||| | Sbjct 45316 CTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTT 45375 Query 33412 CCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-- 33469 || || || || | || || ||||| ||| |||| | |||||||| ||| | || Sbjct 45376 CCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGAC 45435 Query 33470 --CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGT 33527 || ||||| ||||| ||| ||||||| | |||||| || |||| | | || Sbjct 45436 TTCG-TGTCACCAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACAC-ATTCTAGGT 45493 Query 33528 TTC-TATGGCATTAAAGA--------------GAT---------AGtt-----ttt---- 33554 ||| ||| |||||||| | ||| |||| ||| Sbjct 45494 TTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACCG 45553 Query 33555 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTT 33614 ||| ||| ||||| | || || || || | |||| ||||||||| ||||| || || Sbjct 45554 TTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATATT 45613 Query 33615 TTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 33674 || | ||| || || | ||| || || || | || || | ||| || || ||| || Sbjct 45614 CTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACT 45673 Query 33675 AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 33734 ||||| || || |||||| || || ||||| ||||| ||||||||||||| || Sbjct 45674 GAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGAC 45733 Query 33735 ATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGA 33794 | ||| || | || | ||| | | |||||| | | ||| || || Sbjct 45734 GTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTGA 45793 Query 33795 TATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 | ||| ||||| || || |||||||| || ||| |||||||||| || | ||| || Sbjct 45794 AAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATAT 45853 Query 33855 GTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 || | ||| || || || || | ||||| | | ||||| ||| Sbjct 45854 TTCGTTATACTGAATAGGAAAGAGCACAAAGCGAAGGGGATTGGGT 45899 >seq18034 Length=13003 Score = 111 bits (122), Expect = 2e-19 Identities = 225/327 (69%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGC-ACGAATATTACT 63484 || || || ||| |||||||||||| | || ||| |||| | ||| |||||| | Sbjct 11103 ATCCCATTCGATTCACCATTGGTACCAGCAATGTAGGTTCC-CAGGCTTCGAATACAATG 11161 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 || | ||| | ||||| || |||| || || | |||||| | || || || || Sbjct 11162 AACATTCAAACCAACACCCCCAGCATTTTTCGAAATGACGGCGCATTGCTTCAATGTATC 11221 Query 63545 ATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGT 63603 || ||||| || || ||||| || |||| || || || |||||||| |||| || Sbjct 11222 GTAAATACCTTCGATACTATCTTCCTTCATCGTCAACAAG-AAACAGCTGGACAGCTGCG 11280 Query 63604 GACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63663 | | ||||| ||||| || || || || || ||||| || ||||| ||||| || | Sbjct 11281 GTTTAGGTGTTCCGGCATTGAACAACGTCGGGGAGGCGTGTGTGAACCACTTTTCGGACA 11340 Query 63664 GTAGATTGTACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGAC 63721 || ||||| || || || ||| || ||||| |||| |||||| || | || || Sbjct 11341 TAAGGTTGTAGGTTTCGATTGCTCCATCGATATCGTCCAT--ATGAATCCCAATTGACAC 11398 Query 63722 ACGCATTAACATGTGCTGAGGTCTTTC 63748 ||||||| ||| || ||||| | ||| Sbjct 11399 GCGCATTACCATATGTTGAGGACGTTC 11425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622276885452280