Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4653 132 3e-26 seq71848 123 2e-23 seq21372 111 1e-19 seq7081 109 4e-19 seq8542 95.1 8e-15 seq34687 84.2 1e-11 >seq4653 Length=38373 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||| | ||| | ||| || || ||||| || || ||||||||||| Sbjct 8604 ACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGA 8663 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | || | || || || || || || |||||||| || ||||||||||| | || Sbjct 8664 AAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGG 8723 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||||||| ||| |||||| ||||| || | || ||||| | | |||||| Sbjct 8724 GATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAAC 8783 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| | ||||| ||||| || ||||| || |||||||| |||||||| Sbjct 8784 TTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 114 bits (126), Expect = 9e-21 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| ||||||||||| || ||||| || |||||||||||||| ||| ||| | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | || ||||| || || || || || || || || | || | |||||| || Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 ||| || || || || || | || |||||| | | |||||| || || |||||| Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || |||| |||||||| || ||||||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCATG 9060 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 ||||| || | ||| | ||| ||||| ||||| ||||| || ||||| || | Sbjct 9301 CGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCA 9360 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || |||||||| ||||| || || || | || || ||||| | |||| ||||| || Sbjct 9361 TCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTA 9420 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATA 38282 || ||||| ||||||||||| | || || | |||||| || | ||||| Sbjct 9421 TCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATT 9480 Query 38283 GTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| | || ||||| || |||||||| Sbjct 9481 GTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 >seq71848 Length=795 Score = 123 bits (136), Expect = 2e-23 Identities = 80/88 (91%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 25909 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCT 25963 ||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 795 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCA 736 Query 25964 TTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||||| Sbjct 735 TTCATGCGCGTCACTAATTAGATGACGA 708 >seq21372 Length=10632 Score = 111 bits (122), Expect = 1e-19 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 583 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACT 642 Query 20004 CGCGGTAATATTTAGCCTT 20022 || | | ||||||||||| Sbjct 643 CGTGCAAGTATTTAGCCTT 661 >seq7081 Length=29187 Score = 109 bits (120), Expect = 4e-19 Identities = 82/95 (86%), Gaps = 6/95 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 ||||||||||||||| ||||||||||||| |||||||||||| |||||||||| Sbjct 10018 AAGCCCGTTCCCTTGA-TGTGGTTTCGCTATGTAGTAGATAGGGACAGTAGTAATCTCGT 10076 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||||| |||||||||||||||||| Sbjct 10077 CAATCCATTCATGCGCATCACTAATTAGATGACGA 10111 >seq8542 Length=25292 Score = 95.1 bits (104), Expect = 8e-15 Identities = 80/98 (82%), Gaps = 9/98 (9%) Strand=Plus/Minus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG------GGGGTAATC---T 25953 |||||||||||||||||||||||||||||||||||||| || | || |||| | Sbjct 21468 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAAAGGATCCAGTGGGAATCTAGT 21409 Query 25954 CGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||| |||||||| ||| Sbjct 21408 AGTTAATCTATTCATGCGCGTCACCGATTAGATGCCGA 21371 >seq34687 Length=5206 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 19944 TTTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 || ||||||||||||||| ||||||||||||||||||||||||||||| |||||| || Sbjct 3555 TTACTCTCTCTTCAAAGTACTTTTCAACTTTCCCTCACGGTACTTGTTATCTATCGAACT 3496 Query 20004 CGCGGTAATATTTAGCCTT 20022 | | | || || ||||| Sbjct 3495 TGTGTAAGTAGTTGGCCTT 3477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334595794645973