Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2508 226 3e-54 >seq2508 Length=53929 Score = 226 bits (250), Expect = 3e-54 Identities = 527/791 (67%), Gaps = 44/791 (6%) Strand=Plus/Plus Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986 ||||| ||||| || | |||||| ||||||| | || ||||| |||| || | ||| Sbjct 45103 TCAGCGACAAACTCAACGTACTGGCACATCAACTTGCAGTTCATGCCTATCAGGCTGACA 45162 Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046 || |||||||| ||||| | | || | | | ||||| || |||| || | || Sbjct 45163 GGAAGAGCGTCCCCGAAGAATTTGTGTTCCACTTCCACGGCATCCTTCATAATCGCGATA 45222 Query 93047 ACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGT 93105 | | || | ||| || || | || | || ||| ||| | ||| | || || || Sbjct 45223 GCCCG-CTCTCTGGAAGGCTTGTTAACTATGTACTTGAACAGCATGCAAGAGAAATCCGT 45281 Query 93106 ATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCC 93165 || | ||| || ||||| || | ||||| ||||| |||||||| || | || || Sbjct 45282 GTGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCC 45341 Query 93166 TCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGC 93225 ||| || |||||||||||||| | ||| || || || || ||||||| || || || || Sbjct 45342 TCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGC 45401 Query 93226 TGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG---CTGATCCATTTTAA 93282 |||| | ||||| | | || |||| | ||| || || | ||||| |||| Sbjct 45402 TGCATAGGCCACCAGTCTCTCCCCAAAGGT---GGACTTCGTGTCACCAATCCAATTTAG 45458 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG-ATAGCGTTAAA-------- 93333 |||||| | ||| || | | ||| ||| |||||| ||||| ||||| Sbjct 45459 AGCCCATTGGGCCTTGCGTTCCACACATTCTAG-GTTTCGTATAGCATTAAACAAGAAGT 45517 Query 93334 ----------TAG--------GTAATCT------CGCTCGTCCGAATCTCGTATGTATGT 93369 ||| || ||| || || | | ||| ||||| || Sbjct 45518 CACTGAACGATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGT 45577 Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 || || | ||| |||||||||||||||||| |||||||| |||||||| | ||| || Sbjct 45578 GTCTATAAGTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATA 45637 Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATT 93489 || || | ||||| | || || || |||||| |||| ||| | |||||||| Sbjct 45638 AAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGCAGATTTTCGAG 45697 Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTC-AT 93548 ||| ||||| ||| || |||||||| |||| | | ||| || || ||| Sbjct 45698 GACGATACCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCC 45757 Query 93549 CATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 || |||||| | | |||||||||| ||||| ||||||||||||||||| || ||||||| Sbjct 45758 CACCTTTAATCGT-TCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGTCC 45816 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 |||| || || |||| |||||||| | |||||| || | ||| ||||| ||||| | Sbjct 45817 AAAAGGAGGCCACTGCCTTTTTGTAGTATTGCCATATTTCGTTATACTGAATAGGAAAGA 45876 Query 93669 TGACAAAACGA 93679 ||||| ||| Sbjct 45877 GCACAAAGCGA 45887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556261596896920