Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq4653 129 5e-25 >seq4653 Length=38373 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| ||||| || || ||| |||| |||||||||||||| | ||| ||| | ||| Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | | | | || ||| |||||| || ||||||||| | || |||||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| |||| || | ||| || || || ||||||||| || | ||| | | ||||| | Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTT--CTGATTACA 8654 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | ||||| || |||||||| |||||| | ||| | |||||||||||||| Sbjct 8653 ACATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGG 8605 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||||||||||||| |||| || ||||| || || ||||| |||| | || Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||||| || || ||||| | || ||||| Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | || |||| ||| ||||| || | || ||| | || || |||||||||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAAC 9108 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || |||||||| ||||| || || | ||| | ||| |||| ||||||| Sbjct 9107 ATCCAAAAAGAGTCTACGCTGCACCTGGTGCTCCGTTTGCGAGGTGGCA 9059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422596173268600