Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4653 143 2e-29 seq13344 116 3e-21 >seq4653 Length=38373 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| || || |||||||| | ||||| ||||||||| | | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||||| ||||| ||||| ||||| ||||| ||||| Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| ||||| ||| | |||||| ||||| | |||||||| ||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAAC 9108 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||| || || Sbjct 9107 ATCCAAAAAGAGTCTAC 9091 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| || || || || || || ||||| | ||||| ||||| ||| | | Sbjct 8832 GATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAG 8773 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||||| | || | | ||| |||||||| || || || || || || || ||||| Sbjct 8772 CGATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCA 8713 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||||| || |||||||| || || ||||| || ||| ||||| | || |||||||| Sbjct 8712 ACAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAA 8653 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 ||| || || ||||| || ||||| | || | || ||||||| |||| Sbjct 8652 CATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGGTT 8603 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| |||||||| || ||| | || || || || | || || || || ||| ||| Sbjct 9516 GATGCAGATTTTTGTGAAGACTCTTACGGGCAAGACAATTACCCTCGAGGTTGAAGCCAG 9457 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || || | || ||||| ||||| ||||| || || || || ||||| Sbjct 9456 CGACACGATTGAGAATGTGAAGGCGAAAATACAAGATAAGGAAGGAATCCCGCCAGATCA 9397 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || || || || || || ||||||||| ||||| | || || ||||| Sbjct 9396 GCAGCGTTTGATTTTCGCTGGAAAGCAATTAGAGGATGGTCGCACGTTGTCAGACTACAA 9337 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || |||||||| | ||| | |||||||| | ||||| || Sbjct 9336 CATTCAGAAGGAATCCACATTGCATCTTGTTTTGCGGCTTCGCGGTGG 9289 >seq13344 Length=17380 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || ||||| || || || || || || |||| ||||| || ||| | | Sbjct 12188 GATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTC 12129 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || | ||| |||||||||||| || || || ||||| || ||||| Sbjct 12128 GGACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCA 12069 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || || || || || ||| | || || || || |||| || ||||| Sbjct 12068 ACAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAA 12009 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 ||| || || || || || | ||| | ||| |||| |||| || ||| || Sbjct 12008 CATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGGTATT 11957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419287648008895