Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8001 87.8 4e-12 seq30459 86.0 1e-11 seq24369 86.0 1e-11 seq17493 86.0 1e-11 >seq8001 Length=26675 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||||||||||||| |||||||||||||| |||| ||||||||| Sbjct 25591 AGCCCGGATAGCTCAGTCGGTAGAGCGTTAGACTCTTAATCTGACGGTCCAGGGTTCGAG 25650 Query 142563 CCCCACATCGGGC 142575 |||| |||||| Sbjct 25651 CCCCTGTTCGGGC 25663 >seq30459 Length=6515 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 294 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 235 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 234 CCCACGTCGGGC 223 >seq24369 Length=9002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 3155 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 3096 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 3095 CCCACGTCGGGC 3084 >seq17493 Length=13413 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 3349 GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAGC 3408 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 3409 CCCACGTCGGGC 3420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026703159285803