Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq4653 161 2e-34 seq13344 140 6e-28 seq13382 84.2 4e-11 >seq4653 Length=38373 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| ||||||||||| || ||||| || || || ||||| || ||||| || Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| ||||||| || ||||| |||||| Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| || || ||||| || || ||| ||||| || || | ||| || Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACC 9012 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || ||||| || || || || || || |||||||| Sbjct 9013 TCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 147 bits (162), Expect = 4e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| ||||| |||||||||||||||||||||||||| | ||| | ||||| || Sbjct 9079 ACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCG 9138 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || || |||| ||| || || ||||| || |||||||| ||||| Sbjct 9139 AGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGG 9198 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||| ||| || || || || || ||| ||||||| || || ||||| Sbjct 9199 ATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTA 9258 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | || ||||| || || ||||| Sbjct 9259 CCTGTCAACGTTTTGACAAAAATTTGCAT 9287 >seq13344 Length=17380 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || || ||||| || || ||||| || || ||| Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| || ||||| || || | ||||| || || ||| Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| ||||| || || |||||||||||| | | |||||| Sbjct 12081 ATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACC 12140 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || || || | |||||| ||||| || ||||| Sbjct 12141 TCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq13382 Length=17343 Score = 84.2 bits (92), Expect = 4e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 || |||||||| || || || || ||||| |||||| | || |||||||||||||| || Sbjct 7852 CGCGTGATTTTCCGAGTGACAAATGTCTCACCACGTCGGGGACTCTCGTGGTTGAACAGA 7793 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 || || || || |||||||| || || | || || ||||| || || |||| || || Sbjct 7792 ATTCCATTACATGCGAACATCCCGTACGATTCGCGATAGTTGACCACAATCCAATAGGC 7734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920630699736760