Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq4653 104 3e-17 seq21766 89.7 6e-13 seq16514 89.7 6e-13 seq13834 89.7 6e-13 seq4796 89.7 6e-13 seq13344 86.0 7e-12 >seq4653 Length=38373 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||| |||||||| | || ||||| || ||||||||||||| | ||| || | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || |||||||| || ||||| ||||||||||||||||| | ||| | || ||||| Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 ||| ||| || ||| | | | | || || || | ||| || || | ||| || Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || || || || ||||| || ||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||||| || || || | || || | |||||||||||| ||| Sbjct 8641 TCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAAT 8700 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || || || || || | || | || || || ||| ||| |||| | ||| | | Sbjct 8701 ATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCC-TGAATTTTAGCTTTCACGTT 8759 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | || ||||| | ||| || |||| || ||||||||||| || | |||||| || Sbjct 8760 TTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCAC 8819 Query 42197 AAAGATTTGCAT 42208 || || ||||| Sbjct 8820 GAAAATCTGCAT 8831 >seq21766 Length=10411 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 862 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 803 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 802 TACTACCGAGGA 791 >seq16514 Length=14221 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 43 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 102 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 103 TACTACCGAGGA 114 >seq13834 Length=16865 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 12503 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 12562 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 12563 TACTACCGAGGA 12574 >seq4796 Length=37647 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| || || || ||||||||||||| ||||||||||||| Sbjct 8532 CTCCCCGGCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATACTCACCACTA 8473 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 8472 TACTACCGAGGA 8461 >seq13344 Length=17380 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | ||||| || | ||| | ||| |||||| || || ||||| || | Sbjct 11960 ACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGA 12019 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || |||||||| |||||||| || || ||||| || || | || Sbjct 12020 GAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGG 12079 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || || || ||| |||||| ||| | || | | ||||| | ||| | Sbjct 12080 AATTCCTTCTTTATCT-TGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTA 12138 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||| || || || | ||||| || ||||||||||| Sbjct 12139 CCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542628282656720