Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13344 107 2e-18 seq18034 87.8 2e-12 seq4653 84.2 2e-11 >seq13344 Length=17380 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||||| ||| | ||| | | |||||||| || ||||||||||| Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| ||||| || || || | | |||||||||||||| || ||||| Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||||| ||||| | || | |||||| | | || || Sbjct 12081 ATTCCTTCTTTATC-TTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTAC 12139 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | ||| | || || ||||||| || || || || || ||||| Sbjct 12140 CTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq18034 Length=13003 Score = 87.8 bits (96), Expect = 2e-12 Identities = 176/260 (68%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 153483 GGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCC 153542 |||||| ||| ||| || | |||||| |||||||| |||| || | | Sbjct 8768 GGATAGAAATTCACATCTATCACTTTGTTCAGGTTGCGTGTTGCCACGCGCGTCACGTAC 8827 Query 153543 TTAAGTTTCTCGAAATCATAGGT---CATTTCGTCGACGCGTACGCATCGATTCACGGCA 153599 | |||||||| ||||| |||| | ||||| | || ||| | || || | | Sbjct 8828 TGGAGTTTCTCAAAATCGAAGGTTCGCTTTTCGGGGTCG---ACGAAGTGACCGACAGAA 8884 Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 |||||||||||||| || ||||| | ||||| | || |||| ||| || || | | Sbjct 8885 ATAGACGCCAGATTGCAAACGGCAATTTCTTCTGGTGAACTATACTCCACAATTTCAGTG 8944 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || || || ||||| || || |||| || || || ||||| ||||| ||||| ||| Sbjct 8945 CACAGATTACTGCACTTGATCGTTCCCAGGTTCTGTTGGTTGCTCTTGCGGTTGCATGCG 9004 Query 153720 TCTTTGAAGAGCATGTACGG 153739 || ||| | |||||| |||| Sbjct 9005 TCCTTGTAAAGCATGAACGG 9024 >seq4653 Length=38373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||||||| | || | || | | ||||| ||||| ||||| || ||| Sbjct 9060 GCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGA 9119 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||||| || || || | | | || || || || || ||||| || Sbjct 9120 CAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGG 9179 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || |||||| || | | ||| | || || | | ||||| Sbjct 9180 GATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCAC 9239 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | |||||||| |||| ||||| |||||||| |||||| Sbjct 9240 TTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCATG 9288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495728403047760