Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq4653 116 3e-21 seq13344 113 3e-20 >seq4653 Length=38373 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | || || || |||||||| ||||| || || || || |||||||| Sbjct 8833 CCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGAT 8892 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | || || || ||| | || | ||||| ||||| |||| Sbjct 8893 AAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGA 8952 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || || || |||||| |||| |||||||| ||| ||| || Sbjct 8953 ATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACC 9012 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || ||||||||||| |||||||| ||||| Sbjct 9013 TCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||||||| | | || | || || ||||| |||||||| ||||| |||||| Sbjct 9059 TGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCG- 9117 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || ||| || | || || | || |||||||| | |||| || || || || Sbjct 9118 -GACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGG 9176 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||| || |||||||| || ||||| || || |||| || ||||| || ||| Sbjct 9177 TGGGATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTC 9236 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || ||||||||||||| ||||| |||||||||||||| Sbjct 9237 CACTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 100 bits (110), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | ||||| | ||| | || || || || || |||||||| || Sbjct 9287 TGCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTC-- 9344 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||| || || | || |||||||| || |||||| | ||||||||||| || || Sbjct 9345 TGACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGG 9404 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || ||||||||||| || ||||| || ||| | || || || ||||| ||| Sbjct 9405 CGGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTC 9464 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | |||||| || || || || ||||| || |||||||| ||||| Sbjct 9465 AACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || | ||| || ||||| || || |||||||||||||| Sbjct 8605 CCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAA 8664 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| || || || ||||| |||||| || ||||| || || Sbjct 8665 AGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGG 8724 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| || |||| || ||||||||| ||| || Sbjct 8725 ATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACT 8784 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||||| || |||| || || || ||||| ||||| Sbjct 8785 TCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 >seq13344 Length=17380 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| | | ||| | |||||| ||||| || || ||||||||||| || | Sbjct 11961 CCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAG 12020 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| ||||||| | || || |||||| | || | ||||||||| || ||| Sbjct 12021 AGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGA 12080 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || |||||| ||||||| | || || || || | |||||| Sbjct 12081 ATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACC 12140 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || |||| || || || || |||||||| Sbjct 12141 TCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357017046985655