Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4653 122 8e-23 >seq4653 Length=38373 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | ||| ||||| ||||| |||||||| || || || ||||| | Sbjct 8605 CCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCA--G 8662 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | || | || ||| ||||| || || || || |||||| ||||| || || || | Sbjct 8663 AAAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAG 8722 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | |||||||||||||| |||||||| ||| | ||| | ||| ||| || || | Sbjct 8723 GGATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAA 8782 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||||||| |||||||| || | || || || ||||| |||||| Sbjct 8783 CTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCATC 8832 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | ||| || | ||| ||||| |||||||| |||||||| ||||| Sbjct 8830 ATCCCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCA 8889 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || ||||||||| | || | ||| |||||||| || Sbjct 8890 GATAAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGT 8949 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || || || ||| | ||| | || || || || Sbjct 8950 GGAATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCA 9009 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||| || || ||||| |||||||| |||||||| ||||| Sbjct 9010 ACCTCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || |||||||| || || |||||||| ||||||||| ||| | | || ||| Sbjct 9078 CACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCG--GACAATGTGCGACCATCC 9135 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || || || || | |||| ||||||||| ||||| || || ||||| |||||| Sbjct 9136 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCT 9195 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 || ||||| || | ||| | || || | || ||||| ||||| | ||| Sbjct 9196 TGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| |||||||||||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451516827606680