Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4653 145 2e-29 seq13344 123 6e-23 >seq4653 Length=38373 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | || || || || ||||| |||| ||||| |||| ||||| Sbjct 8839 CGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTA 8898 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| ||||||||||| ||||| ||||| ||||||||||| || ||| ||| Sbjct 8899 CGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCT 8958 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| || ||| ||||| || || | | ||| || |||||| Sbjct 8959 TCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAAC 9018 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||||||||||||||| || Sbjct 9019 GTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTG 9056 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| || || ||||| ||||||| ||| || || | ||| || | ||||| Sbjct 9076 AGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCC 9135 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || || || || ||||| ||||| || ||||| || Sbjct 9136 TCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCT 9195 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||||||| ||| | || || ||| ||| || |||| || || || Sbjct 9196 TGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | ||||| ||||||||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTG 9284 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || | || || ||||| || | ||||||||| | ||| || Sbjct 9295 CGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTG 9354 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || | |||||||| ||||| || | ||||||||| || || |||||| Sbjct 9355 CGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCT 9414 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || || || |||||| || | ||||| | | ||| || || | Sbjct 9415 TCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGG 9474 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| ||||| ||||||||||| || Sbjct 9475 GTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTG 9512 >seq13344 Length=17380 Score = 123 bits (136), Expect = 6e-23 Identities = 161/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || || || || || |||||||| || | ||||||||| | | || Sbjct 11966 TCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGT 12025 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || ||||| ||||||||||| ||||| || |||||||| || || ||| |||||| Sbjct 12026 TCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCC 12085 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| || ||||| |||||| || || |||| |||||| | | |||||| || | Sbjct 12086 TTCTTTATCTTGAAT-TTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAA 12144 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| ||||| || || | || || || || ||||| Sbjct 12145 GCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTG 12184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177621322052561