Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4653 116 4e-21 >seq4653 Length=38373 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| ||||| | |||||| |||| ||| ||| |||||||| || || |||| Sbjct 9059 TGCCACCTCGCAAACGGAGCACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGG 9118 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||||| | || |||||||||||||| || || |||| || ||||| || | | Sbjct 9119 ACAATGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTG 9178 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| || ||| || ||| | | | | ||| || || | ||||| Sbjct 9179 GGATACCTTCCTTATCTTGGATTTTAGCCTTCACGTTTTCAATCGTATCACTTGCTTCCA 9238 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 9239 CTTCCAGAGTTATTGTTTTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| |||| ||| | ||| ||||| ||||||||||| || |||| ||| || | Sbjct 8845 CGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGACCA 8904 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| || ||||| || | ||||||||||| | || | || ||||| Sbjct 8905 TCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTA 8964 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| || | | | | || || || | ||| || |||| ||| || Sbjct 8965 TCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTAATA 9024 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || ||||| ||||| ||||| || ||||| Sbjct 9025 GTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || ||||||||||| ||||| || || |||||||| || | ||||| | Sbjct 9301 CGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCTGACAACGTGCGACCA 9360 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || | ||||| || ||||| ||||| |||||||| || | ||| | | ||||| Sbjct 9361 TCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGCGGGATTCCTTCCTTA 9420 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || || ||| ||| | || | | ||||||||| | ||| || || | || || Sbjct 9421 TCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCAACCTCGAGGGTAATT 9480 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || ||||| || ||||| Sbjct 9481 GTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564630182285160