Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2508 232 7e-56 seq13344 113 5e-20 seq4653 107 2e-18 >seq2508 Length=53929 Score = 232 bits (256), Expect = 7e-56 Identities = 442/644 (69%), Gaps = 38/644 (6%) Strand=Plus/Plus Query 132882 CTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTT 132941 |||||||| || ||||| || || |||| ||||| || | ||||||||| || Sbjct 45255 CTTGAACAGCATGCAAGAGAAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATT 45314 Query 132942 GCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACT 133001 ||||| || || |||||||||||||| || ||||||||||||||||| || ||||| || Sbjct 45315 ACTGAAGGTTAAACCGGGCATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCT 45374 Query 133002 GCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGG- 133060 ||||| || || |||||||| || || || | |||||||| | ||| || || |||| Sbjct 45375 TCCCGAGAAAAATACGCCCTCAACTGCTGCATAGGCCACCAGTCTCTCCCCAAAGGTGGA 45434 Query 133061 CTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCG 133120 |||| | | | ||||| || ||||||| |||||| || || || | | Sbjct 45435 CTTCGTGTCAC-CAATCCAATTTAGAGCCCATTGGGCCTTGCGTTCCACACATTCTAG-G 45492 Query 133121 TTTCG-ATGGCGTTCAACAA-----------ACGG----------AGTT-TCTCTT--CC 133155 ||||| || || || ||||| ||| |||| || || || Sbjct 45493 TTTCGTATAGCATTAAACAAGAAGTCACTGAACGATAGAGCAGCAAGTTATCAATTTACC 45552 Query 133156 G------AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGT 133207 | ||| | | ||| ||||| || || |||||||||| || || | | Sbjct 45553 GTTCTTTAGGGTCTTTGATGTACGTGTCTATAAGTAGACAATACATTTCAGAATGGATAT 45612 Query 133208 TCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAG 133267 |||||| ||| ||||| | || |||||||| ||||| || | || || |||||| Sbjct 45613 TCTCCACGGCAATTTGCATTCCATAAAAGCAGCGCGCTTCAGGAATTTGAACCTCTTGAC 45672 Query 133268 CGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCA 133327 ||| ||||||| |||||||||| |||||| |||||||||||||| ||||| ||||| | Sbjct 45673 TGAATCGCTCGAGCAGATTTTCGAGGACGATACCGTCGCTGGCGGCAAAAAACGCCAGGA 45732 Query 133328 CGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGG 133387 ||| ||||| |||||||| | || || || ||||| ||| | ||||| | Sbjct 45733 CGTAAGATATGAAGTGGCGCTCTCCCACCTTTAATCGTTCCCAATCGGTCAGATCCTTTG 45792 Query 133388 ACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACT-CCAC 133446 | || || || ||||| || |||||||| || ||| | || |||||||| || | ||| Sbjct 45793 AAAGATCGACTTCCTCAACAGTCCAAAAGGAGGCCACTGCCTTTTTGTA-GTATTGCCAT 45851 Query 133447 ATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTT 133490 || || ||| || || ||||| | |||||| || |||| || Sbjct 45852 ATTTCGTTATACTGAATAGGAAAGAGCACAAAGCGAAGGGGATT 45895 >seq13344 Length=17380 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || || |||||||| | || || || | | Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | |||| |||||| | || ||||| |||||||| | || ||| Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || |||| || || ||| ||||||||| Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || ||| | || |||||| || |||| || Sbjct 12007 ATACAGAAGGAGTCTACACTTCATCTCGTTCTGCGTCTGCGAGGTGG 11961 >seq4653 Length=38373 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||| | || ||||||||||| || |||| || || || | | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | ||||| | |||| ||||| | || ||||| || || || | || || Sbjct 8771 GATACCATCGAAAACG-TGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCA 8713 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||| || | || || || ||| |||| || | ||||| || || ||||| Sbjct 8712 ACAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAA 8653 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || |||||| | ||||| ||| | ||||| ||| || | || || Sbjct 8652 CATACAGAAGGAATCTACGCTACATCTCGTGCTCCGTCTGCGCGGTGG 8605 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || |||||| | || || ||||| || || | || || || || | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | || | ||||||| || || || || || || | || || Sbjct 9227 GATACGATTGAAAACG-TGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCA 9169 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| || ||||| ||||| || || | ||||| | ||| || || Sbjct 9168 GCAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAA 9109 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| || | |||||||| ||||||| |||||| |||| ||| Sbjct 9108 CATCCAAAAAGAGTCTACGCTGCACCTGGTGCTCCGTTTGCGAGGTGGC 9060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634595310720