Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1732 363 1e-94 seq8654 165 6e-35 seq6236 96.9 3e-14 >seq1732 Length=63940 Score = 363 bits (402), Expect = 1e-94 Identities = 966/1460 (66%), Gaps = 22/1460 (2%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 |||||| | || || || ||||| | |||||| || || || || || || || || || Sbjct 45703 CACATTCAATATCCCGTTCGCATCAATATCAAAGGTCACCTCGATCTGTGGCACACCCCT 45762 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 | | || ||||||| ||| | | |||| |||||| ||| ||||| || || | Sbjct 45763 CGGTGCTGGTGGGAATCCTGATAGTTCAAATTTTCCCAATAAATTGTTATCCTTTGTCAT 45822 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 ||||| |||||| | | ||| || ||| | ||||||||| || || || || Sbjct 45823 CGCGCGTTCCCCCTCGTACACTTGAATTAAAACACCTTGTTGATTATCCGAGTACGTGGT 45882 Query 517444 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 ||| | | || ||| ||| ||||| ||||| || | | || | |||||| | Sbjct 45883 AAA-AGTTTGTGTTTGTTTTGTCGGAATAGTTGTATTCCGTTTGATTAGTGGGGTCATCA 45941 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT- 517561 ||||| || ||||| || || || || || ||||| ||||| | || ||| ||| | Sbjct 45942 CGCCACCGGCGGTTTCCAATCCCAGGGACAGCGGAGTCACATCGAGTA--ACAGTATGTC 45999 Query 517562 -TGAAGTTTTTCATCAGTT-TGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATG 517619 |||| || | | || | ||| ||||| |||||||||| || || || || | Sbjct 46000 CTGAACCACGTC-TGATTTGTCTCCACTCAGAATCGCTGCTTGAACTGCTGCGCCGTACG 46058 Query 517620 CAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAA 517678 | || ||||| || ||||| | | || || |||| || |||||||| |||| || | Sbjct 46059 CGACCGCTTCGTCCGGATTGATGGATTTGTTCAGTTCCTTTCCATTGAAGAAATCCTGCA 46118 Query 517679 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 517738 | || || | | || ||||| | || ||| || || || | |||||||| || | | Sbjct 46119 ATAACTTCTGG-ATTTTTGGAATCCTAGTTGAACCACCCACAAGGACAATTTCGTGAATC 46177 Query 517739 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTA 517798 || | |||||||||||| | ||| ||| |||| || || || || || || Sbjct 46178 TGGGTTTTATCCAGTTTAGCATCACGTAAGGCTTTCTCGACCGGATCCAGTGTGCTTCGG 46237 Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 517858 |||| || | || | ||| || ||| || | || | ||| | |||| ||| Sbjct 46238 AACAGATCCGCGCACAATTCCTCAAATCGGGCACGGGTGATTGTGGTGTAGAAATCGATT 46297 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 ||||||||||| || |||| ||| | | | ||| | | | |||| || || Sbjct 46298 CCTTCGAACAATGAGTCAATTTCCACATTGGCTTGTGCGCTGGCACTCAGTGTGCGCTTG 46357 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCAAATCTG 517976 || |||||||| ||||||| ||| | ||| | | | |||| | ||| || |||| Sbjct 46358 GCTCGTTCACAAGCTGTCCGTAGACGTCGAAGCGAACGTTTGTTATCTGA--CAGATCTT 46415 Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATC 518034 |||| | ||||| || || || | ||| | ||| | || | |||| | || ||||| Sbjct 46416 TTTTGTTTTTTCGTTTAAATTCCTGCACAAA--ATGACTGACTAAACGACTGTCGAAATC 46473 Query 518035 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 518094 |||||| ||||| | |||| || | || | | || | || | || ||||| | Sbjct 46474 TTCACCGCCCAAATGTGTATCACCCGCGGTGGACTTGACCTCAAATATGCCCTCTTCCAT 46533 Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 | ||| | || ||||| || |||||||||| || ||||| || ||||| ||| Sbjct 46534 GGCCAATACAGACACATCGAATGTACCACCACCCAGGTCGAAAATCAGAACATTGCGTTC 46593 Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 | | |||||||| | ||||||||| | |||||||| |||||||| ||||| || Sbjct 46594 GGTCCCACTTTTTTTATCCAAACCATACGCGATCGCAGCAGCTGTTGGTTCGTTAATGAT 46653 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 ||| || ||||| | |||||||||| | || |||||||| |||||||||||||| || Sbjct 46654 TCTTAACACATTCAAACCAGCAATTGTGCCAGCATCTTTTGTGGCTTGTCTTTGACTGTC 46713 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCT 518334 |||||||| || || || ||||| || ||| ||||| | |||||| ||| || Sbjct 46714 ATTAAAATAAGCCGGCACGGTAATCACACTATCTGTTACCGTTCTACCAAGATACGCCTC 46773 Query 518335 TGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTT 518394 || |||| |||||| | || | ||| ||||| || | ||| ||| || | || Sbjct 46774 GGCTGTTTCACGCATTTTCATCAACACCATGGATGATATCTCTTCCGGGAAAAAAGATTT 46833 Query 518395 GGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAA 518454 | || | ||| || | | | |||||| | | |||| ||| ||| | || Sbjct 46834 TGTCTCTCCCTTGTATTCGACCTGTATTTTTGGTTTTCCAGCCACATCAATCACTGTGAA 46893 Query 518455 TGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTCTACCAATTAAT 518512 ||||||| ||| ||| | | |||| || |||| ||| | ||| || | Sbjct 46894 CGGCCAGTGTTTTCGATC--CTCGGCCACTGCGGGATCATCAAAGCGACGACCGATCAGA 46951 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||| || || || | |||||| || ||||| || || | |||| | | || || ||| Sbjct 46952 CGTTTGGCGTCGAACACAGTATTTGTGGGATTCATAGCCACCTGATTTCTCGCAGCGTCT 47011 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 |||||||| | || | || || |||| ||||| || || || ||||| || || Sbjct 47012 CCAATCAGTCGCTCGTTGTCCGTGAATGCCACATAGCTCGGTGTAGTTCGATTGCCCTGG 47071 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 ||||| || |||||||| || || || |||| | || || ||||| | || || Sbjct 47072 TCATTTGCGATAATTTCCACCTTGCCGTTTTTGAAAACTCCCACACATGAGTAGGTGGTG 47131 Query 518693 CCTAAATCAATACCAATAGC 518712 |||| ||| || ||||| || Sbjct 47132 CCTAGATCTATGCCAATTGC 47151 >seq8654 Length=25055 Score = 165 bits (182), Expect = 6e-35 Identities = 479/733 (65%), Gaps = 6/733 (1%) Strand=Plus/Minus Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATCAAAATCTT 518036 ||||| || |||||||| |||| || | ||| | || | |||||| || ||||||| Sbjct 24668 TTATACTTCCTCTTGAACTCTTGAATGAA--ATGACTAACCATACGATTGTCGAAATCTT 24611 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || || | | || | |||| |||| | |||| ||| | |||||| || | | Sbjct 24610 CGCCACCAAGATGTGTGTCACCTGCAGTAGACTTCACTTCGAAGACTCCATCCTCGATGG 24551 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 | || | |||||| ||| || || |||| |||||||||||| || || ||| Sbjct 24550 TAAGAATGGATACATCGAAGGTGCCGCCTCCCAAATCAAAAATAAGCACGTTACGTTCCC 24491 Query 518157 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 518216 | ||||| || | ||||| || | ||||||||||| ||||| || || || | Sbjct 24490 CACCAACCTTTTTGTCCAATCCATAGGCTATGGCAGCAGCAGTGGGTTCGTTGATTATGC 24431 Query 518217 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 518276 || ||| ||||||||||| || || | ||| ||||| ||||| || || ||||| Sbjct 24430 GCAGAACGTTAAGACCAGCGATAGCACCGGAATCCTTAGTTGCTTGCCTCTGGCTATCGT 24371 Query 518277 TAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTG 518336 | || || || || ||||| || || || || || || | ||||| | || | | Sbjct 24370 TGAAGTAGGCCGGGACAGTGATCACAGCGTCCGTGACCTTCTTACCCAGGTATCCCTCAG 24311 Query 518337 CCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGG 518396 | || |||||||| |||| ||||| || || || | ||| | | | | || || Sbjct 24310 CAACTTCCTTCATTTTCATTAAGATCATGGAAGATATCTCTTCAGCCG-AGAATGTTTTC 24252 Query 518397 AT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 518455 || ||| || || ||| || | || |||| | | || |||| ||| Sbjct 24251 ATCTCACCTTTGTACTCCACTCGAATCTTCGGCTTATCATTCTCGGAGATCACTTCAAAC 24192 Query 518456 GGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 518515 | ||||| || ||| | || ||||| | || | || || | || Sbjct 24191 GACCAGTGCTTGCGATCGGCGGTGACTGAGGGGTCACTGAATCGGCGTCCGATGAGACGC 24132 Query 518516 TTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCA 518575 || || ||||| | || ||| ||||||| || || |||| | ||| || ||||| ||| Sbjct 24131 TTCGCGTCAAAGACGGTGTTGCTTGGATTCATGGCCACTTGGTTTTTCGCGGCATCACCA 24072 Query 518576 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 518635 || || |||| || || ||||| | ||||| || || ||||| |||||||| ||| Sbjct 24071 ATGAGTCGTTCAGTGTCCGTAAAAGCCACATAACTGGGTGTCGTGCGGTTACCTTGGTCA 24012 Query 518636 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 518695 || |||||||| ||||| || || | || | ||||| || || | || || || Sbjct 24011 TTGGCAATAATCTCAACCTTCCCGTGCTGGAAAACACCGACGCAGGAGTAGGTCGTGCCC 23952 Query 518696 AAATCAATACCAA 518708 |||||||| |||| Sbjct 23951 AAATCAATCCCAA 23939 >seq6236 Length=31905 Score = 96.9 bits (106), Expect = 3e-14 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 668855 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATGTCTGCACGT 668914 ||||||| ||||||||| |||| || |||||||||||||||| ||| | ||||||||| Sbjct 15430 GGTAAAGCTGGTCGTATTCGAGGCAACCTGATGGGAAAACGTGTGGATTTCTCTGCACGT 15371 Query 668915 ACAGTTATTACTTCTGATCCCAATATTGCTCTCA-ATGAAGTTGGTGTTCCTCTTATTAT 668973 ||||| || || | ||||| ||| ||| || | | |||| |||||||| | | || Sbjct 15370 ACAGTCATAACAGCCGATCCGAAT-TTGAACTTAGACCAAGTCGGTGTTCCACGCACAAT 15312 Query 668974 TGCTAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAGTATTTG 669028 || ||||||| || | | |||| || || || |||||||| ||||| Sbjct 15311 CGCACAAAATCTCACCTATCCGGAAACGGTCACGCAATTCAATATTGATCATTTG 15257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3776550677982598