Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq20873 89.7 6e-13 >seq20873 Length=10948 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 169338 GAAGCGTCGCGGACATTCTTACACTTC-CCACGGAGAGGAAAGACGCCATAGTGATCACG 169396 || || ||||| ||||| | ||| || || || || |||||||| ||||| | ||||| Sbjct 4783 GAGGCTTCGCGAACATT-TAACAATTTGCCCCGCAGTGGAAAGACCCCATAATTGTCACG 4725 Query 169397 TCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAAT 169456 ||||| || ||||| || ||||| | || ||| || ||||||||||| || | ||| Sbjct 4724 GCCAACAACTCCAAGACCGGCCACCGCCAAGGATTTGGCCGAATCACCCTCGGTTAGAAT 4665 Query 169457 GAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAAT 169516 ||| || || | || | ||| || || ||||| || || ||||| ||||| || Sbjct 4664 GAGCGTGCAAGTAGATGAGTTTTTCGTGCCTGCGTTGTTAGCATCATCCAATTTGGGTAT 4605 Query 169517 ACC 169519 ||| Sbjct 4604 ACC 4602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589345958534920