Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq13344 168 1e-36 seq4653 136 9e-27 >seq13344 Length=17380 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| || ||||| || ||||| || || || ||||| || | || |||| || || Sbjct 11975 CAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTTCGACCGTC 12034 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||||||||| || ||||| || || || ||||| || |||||||| |||||||| || Sbjct 12035 TTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCTTCTTTATC 12094 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||||||| || || ||||| |||||||||||| ||| || ||||| || | || Sbjct 12095 TTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAGCGTGATGGT 12154 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | |||||| Sbjct 12155 CTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || ||||||||||| || || ||||||| | || | ||||| ||| Sbjct 9079 ACCAGGTGCAGCGTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCG 9138 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||||||| || || || || || ||||| || ||||| Sbjct 9139 AGCTGCTTGCCAGCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGG 9198 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||| ||||| ||||| || || ||| ||||||||| || || | || Sbjct 9199 ATTTTAGCCTTCACGTTTTCAATCGTATC---ACTTGCTTCCACTTCCAGAGTTATTGTT 9255 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| ||||| || || | |||||| Sbjct 9256 TTACCTGTCAACGTTTTGACAAAAATTTGCAT 9287 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || |||||||| | ||| || | |||||||| Sbjct 8623 ACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGACCATCTTCC 8682 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||||||| || || || || |||||||| |||||||| ||||||||||| || ||| Sbjct 8683 AACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCTTTATCCTGA 8742 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || ||||| || ||||| || | ||| ||||| || |||| || || Sbjct 8743 ATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTAATGGTTTTG 8802 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 8803 CCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| || | ||||| || || || || || ||||||||||| | | ||| | Sbjct 8842 AGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGA 8901 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| |||||||| || ||||| || |||||||| ||||||||||| Sbjct 8902 CCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCC 8961 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || || ||||| || || || || | ||| || || | ||| Sbjct 8962 TTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTA 9021 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||||||| |||| |||||| || || | ||||| Sbjct 9022 ATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108257910097661