Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2508 105 8e-18 >seq2508 Length=53929 Score = 105 bits (116), Expect = 8e-18 Identities = 389/604 (64%), Gaps = 48/604 (8%) Strand=Plus/Plus Query 37196 ACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttt 37255 ||| ||||||| ||| || | ||||||| |||||||| || ||||| | |||| || Sbjct 45288 ACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGCATGAGGCCTCGCTT 45347 Query 37256 tttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAA 37315 ||| | ||||||||| || || || ||| || || || | || |||||||||||| | Sbjct 45348 TTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCCTCAACTGCTGCATA 45407 Query 37316 TGCTACAAGACGTGTACCGAAAGTTGAACTATAA-TCAGAAATCCAtttttttGTCCAAT 37374 || || || | | | || |||| || ||| ||| |||||| ||| | ||| | Sbjct 45408 GGCCACCAGTC-TCTCCCCAAAGGTGGACTTCGTGTCACCAATCCAATTTAGAGCCCATT 45466 Query 37375 CTGCCTTTAATTTAACACATTCAATTGTTTCA-ATTGCTTTTAAGA-------------- 37419 ||||| || |||||||| | ||||| || || || || | Sbjct 45467 GGGCCTTGCGTTCCACACATTCTAG-GTTTCGTATAGCATTAAACAAGAAGTCACTGAAC 45525 Query 37420 ---------GAAAGtt-----ttt----ttCTTCACTATCTGTTATATAAGTATCAATTA 37461 | ||||| ||| ||||| | ||| | || || || || || | Sbjct 45526 GATAGAGCAGCAAGTTATCAATTTACCGTTCTTTAGGGTCTTTGATGTACGTGTCTATAA 45585 Query 37462 GTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACC 37521 ||| || |||||||||||| || ||||| || | || || || | |||||||| || | Sbjct 45586 GTAGACAATACATTTCAGAATGGATATTCTCCACGGCAATTTGCATTCCATAAAAGCAGC 45645 Query 37522 TAGCTTCAGATAATTGAACATCGTTAAAAAACCTCT-TAGCTAAGTTTTCATTAACTATC 37580 ||||||| | |||||| || | | || | || ||| | ||||| || || Sbjct 45646 GCGCTTCAGGAATTTGAACCTCTTGACTGAATCGCTCGAGC-AGATTTTCGAGGACGATA 45704 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATG----TCTTTCATCATT 37636 || || || || ||||| || || || || || ||| || || ||| || | | Sbjct 45705 CCGTCGCTGGCGGCAAAAAACGCCAGGACGTAAGATATGAAGTGGCGCTCTCCCACCTT- 45763 Query 37637 TGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| || |||||| | | ||| ||||| | ||| ||||| ||||| |||||||| Sbjct 45764 ---TAATCGTTCCCAATCGGTCAGATCCTTTGAAAGATCGACTTCCTCAACAGTCCAAAA 45820 Query 37697 ACTTGCCAATGCACGTTTATA-CATCGTCCAAATATCATTATGTTGTATTGGAAATATTA 37755 |||| ||| ||| || || | ||| || || |||| || || ||||| | | Sbjct 45821 GGAGGCCACTGCCTTTTTGTAGTATTG-CCATATTTCGTTATACTGAATAGGAAAGAGCA 45879 Query 37756 CAAA 37759 |||| Sbjct 45880 CAAA 45883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591679444911320