Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4653 127 2e-24 seq13344 86.0 5e-12 >seq4653 Length=38373 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| ||||| || || || |||||||||||||||| | | ||| Sbjct 8842 AGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCAGATAAAGTACGA 8901 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || || || || |||||||| || || | |||| ||| ||| Sbjct 8902 CCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCC 8961 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| |||||| | | || || || || ||||||| |||| Sbjct 8962 TTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCAACCTCCAACGTA 9021 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| |||||| |||||||||||||| Sbjct 9022 ATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||||||||| || || || || ||||||||||| || | ||| Sbjct 8614 AGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGAAAGTGTGCGA 8673 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||||||||| ||||||||||| || |||||||| | || | ||| || Sbjct 8674 CCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGGGATGCCTTCT 8733 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| || | | | || || || || || | ||| Sbjct 8734 TTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAACTTCGAGAGTA 8793 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || ||||| || || || |||||||||||| Sbjct 8794 ATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCATC 8832 >seq13344 Length=17380 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| || || ||| || || || ||||| || || || ||||| Sbjct 11970 AGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAGTCCGAGAGCGTTCGA 12029 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| || || || || || ||||||||||| | |||| || || Sbjct 12030 CCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCAGGAGGAATTCCTTCT 12089 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| ||| ||||||| | | | || || | || ||||| | ||| Sbjct 12090 TTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGTTCTACCTCAAGCGTG 12149 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || ||||| || || || || || ||||||||| Sbjct 12150 ATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCATCGTG 12191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380537944435809