Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq20873 98.7 1e-15 seq18034 82.4 9e-11 >seq20873 Length=10948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 13553 GGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGTACT 13612 ||||| ||||| |||||||| || ||||| || || ||| | | || | || || Sbjct 4602 GGTATACCCAAATTGGATGATGCTAACAACGCAGGCACGAAAAACTCATCTACTTGCACG 4661 Query 13613 CTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTCGTT 13672 |||||| | || |||||||||||||| ||| || | ||||| || ||||| || ||| Sbjct 4662 CTCATTCTAACCGAGGGTGATTCGGCCAAATCCTTGGCGGTGGCCGGTCTTGGAGTTGTT 4721 Query 13673 GGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAA-TGTAAGAATGTTCGGGACGC 13731 || ||||| | || || || || ||||| || || ||| ||| | |||||||| || || Sbjct 4722 GGCCGTGACAATTATGGGGTCTTTCCACTGCGGGGCAAATTGTTA-AATGTTCGCGAAGC 4780 Query 13732 TTC 13734 || Sbjct 4781 CTC 4783 >seq18034 Length=13003 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/136 (74%), Gaps = 4/136 (3%) Strand=Plus/Minus Query 75923 aTGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAG 75982 |||||||||||||| || || ||| ||||| |||||| |||| ||||||| |||||| Sbjct 9018 ATGCTTTACAAGGACGCATGCAACCGCAAGAGCAACCAACAGAACCTGGGAACGATCAAG 8959 Query 75983 AGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA--GGATGAGACGGCTGTTT 76040 || ||||| ||||| |||||| | |||| | || | | || || | || |||| Sbjct 8958 TGCAGTAATCTGTGCACTGAAATTGTGGAGT--ATAGTTCACCAGAAGAAATTGCCGTTT 8901 Query 76041 GCAATTTGGCATCAAT 76056 ||||| |||| || || Sbjct 8900 GCAATCTGGCGTCTAT 8885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595927668739040