Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4653 131 2e-25 seq13344 89.7 8e-13 seq2508 86.0 9e-12 >seq4653 Length=38373 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| |||| ||||| |||||||| || || || |||| | | Sbjct 9059 ATGCAGATTTTTGTGAAAACTCTGACCGGAAAGACTATTACGTTGGAGGTTGAAGCTAGT 9000 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||| || || ||||| |||||||| || ||||| || Sbjct 8999 GATACTATCGAAAACGTAAAAGCTAAGATCCAGGATAAGGAAGGCATTCCACCAGACCAG 8940 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| || || |||||||| |||||| | |||||||| ||||| ||| Sbjct 8939 CAGCGACTCATTTTCGCAGGAAAGCAGCTTGAAGATGGTCGTACTTTATCTGATTACAAT 8880 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || || || | ||||||||||| || || Sbjct 8879 ATCCAGAAGGAATCTACGCTTCATTTGGTATT 8848 Score = 127 bits (140), Expect = 3e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||| || ||||| || || | ||||| |||| | Sbjct 9287 ATGCAAATTTTTGTCAAAACGTTGACAGGTAAAACAATAACTCTGGAAGTGGAAGCAAGT 9228 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||||||| |||||| |||||||| ||||| || || || || || Sbjct 9227 GATACGATTGAAAACGTGAAGGCTAAAATCCAAGATAAGGAAGGTATCCCACCGGATCAG 9168 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| || |||||| ||| || ||||||||||| ||| | || || || |||||||| Sbjct 9167 CAACGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGATTATAAC 9108 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | ||||| || Sbjct 9107 ATCCAAAAAGAGTCTACGCTGCA 9085 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || |||||||| ||||| ||||| | ||||| |||| | Sbjct 8831 ATGCAGATTTTCGTGAAGACGTTGACTGGCAAAACCATTACTCTCGAAGTTGAAGCTAGC 8772 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||||| |||||| || |||||||||||||| |||||||| ||| Sbjct 8771 GATACCATCGAAAACGTGAAAGCTAAAATTCAGGATAAAGAAGGCATCCCTCCAGATCAA 8712 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | |||| | ||| ||||||||| | |||||| | || | || ||||| || Sbjct 8711 CAACGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGTCGCACACTTTCTGATTACAAC 8652 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || || | ||||| ||| | ||| Sbjct 8651 ATACAGAAGGAATCTACGCTACATCTCGTG 8622 >seq13344 Length=17380 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || |||||||| || || || || | || || ||| ||| Sbjct 12187 ATGCAAATCTTCGTTAAGACCTTGACTGGGAAGACCATCACGCTTGAGGTAGAACCTTCG 12128 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||||||||| || ||||| || ||| Sbjct 12127 GACACCATCGAGAATGTAAAAGCAAAAATTCAAGATAAAGAAGGAATTCCTCCTGATCAA 12068 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | | |||| || || |||||||||||||| |||| | || || || || Sbjct 12067 CAGCGTCTAATTTTCGCTGGAAAGCAGCTCGAAGACGGTCGAACGCTCTCGGACTACAAC 12008 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || ||| | || |||||| Sbjct 12007 ATACAGAAGGAGTCTACACTTCAT 11984 >seq2508 Length=53929 Score = 86.0 bits (94), Expect = 9e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18164 AAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGC 18223 ||||| ||||| | ||| ||||||| || | ||| ||||| || ||||| |||||| Sbjct 45274 AAATCCGTGTGCAGACCCTCATCTCGACTAATGAGTTCATTACTGAAGGTTAAACCGGGC 45333 Query 18224 ATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCC 18283 || | |||| ||||| ||||||||||||| ||||| || | || || |||| ||| Sbjct 45334 ATGAGGCCTCGCTTTTTGAGCCAAAATATCGCAGCGAAGCTTCCCGAGAAAAATACGCCC 45393 Query 18284 TCAAC 18288 ||||| Sbjct 45394 TCAAC 45398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731084478282800