Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4653 125 1e-23 seq13344 123 5e-23 >seq4653 Length=38373 Score = 125 bits (138), Expect = 1e-23 Identities = 170/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 192301 TTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTA 192360 ||||| | |||||| | ||||| | || | ||||| |||| || || || || Sbjct 8597 TTAATTA-ACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTG 8655 Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 |||||||| | ||| || |||| ||||| || ||||||||||| || | | |||||| Sbjct 8656 TAATCAGAAAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGA 8715 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 || || || || ||||||||||| || |||||| ||| || || || | ||| Sbjct 8716 TCTGGAGGGATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTA 8775 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | ||| ||||| |||||||||||||| ||||| || || || | || |||||||| Sbjct 8776 GCTTCAACTTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || ||||| ||||| | |||| || || |||||| |||||| Sbjct 8830 ATCCCACCGCGAAGTCGCAATACCAAATGAAGCGTAGATTCCTTCTGGATATTGTAATCA 8889 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| || || |||| || | || || || || || || | || ||| || || ||| Sbjct 8890 GATAAAGTACGACCATCTTCAAGCTGCTTTCCTGCGAAAATGAGTCGCTGCTGGTCTGGT 8949 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || ||| |||||| || |||| ||| | ||| Sbjct 8950 GGAATGCCTTCCTTATCCTGGATCTTAGCTTTTACGTTTTCGATAGTATCACTAGCTTCA 9009 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||||| || || || || | ||||| | ||| |||||||| Sbjct 9010 ACCTCCAACGTAATAGTCTTTCCGGTCAGAGTTTTCACAAAAATCTGCAT 9059 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||| || || || | ||| || || | || || || || || || Sbjct 9286 ATGCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCT 9345 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || ||||| || ||||| || || || | ||| ||||| || Sbjct 9346 GACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGC 9405 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||||||||| || ||||| || | || | ||| Sbjct 9406 GGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCA 9465 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || || | || || | ||| |||||||| Sbjct 9466 ACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 >seq13344 Length=17380 Score = 123 bits (136), Expect = 5e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||||||||||||| ||||| | || | ||| | |||| ||| || || || || Sbjct 11955 ATAATACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAG 12014 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 || || | ||||| | || || | || || ||||| || |||| | |||||||||| Sbjct 12015 TCCGAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCA 12074 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || ||||||||||||||||| ||||| ||||||||| || | || || | | Sbjct 12075 GGAGGAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGT 12134 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || ||||| || ||||| || || |||| || || ||||| Sbjct 12135 TCTACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983394179167050