Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq13344 127 4e-24 seq4653 105 1e-17 >seq13344 Length=17380 Score = 127 bits (140), Expect = 4e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 ||||||||||||| || || | || | ||| | |||| ||| || || || || Sbjct 11955 ATAATACCACCTCGCAGACGCAGAACGAGATGAAGTGTAGACTCCTTCTGTATGTTGTAG 12014 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || | | ||| |||| || | || || ||||| ||||||| | |||||| ||| Sbjct 12015 TCCGAGAGCGTTCGACCGTCTTCGAGCTGCTTTCCAGCGAAAATTAGACGCTGTTGATCA 12074 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || ||||||||||||||||| ||||| ||||||||| || || || || | | Sbjct 12075 GGAGGAATTCCTTCTTTATCTTGAATTTTTGCTTTTACATTCTCGATGGTGTCCGAAGGT 12134 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || ||||| || ||||| || || |||| ||| || ||||| Sbjct 12135 TCTACCTCAAGCGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAGATTTGCAT 12187 >seq4653 Length=38373 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || | ||||| |||| || || || || ||||| || Sbjct 8604 ACCACCGCGCAGACGGAGCACGAGATGTAGCGTAGATTCCTTCTGTATGTTGTAATCAGA 8663 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || ||||| || ||||||||||| || | | ||||| || || || Sbjct 8664 AAGTGTGCGACCATCTTCCAACTGCTTACCAGCAAATATCAGCCGTTGTTGATCTGGAGG 8723 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || ||||||||||| || |||||| ||| || || || ||||| | ||| || Sbjct 8724 GATGCCTTCTTTATCCTGAATTTTAGCTTTCACGTTTTCGATGGTATCGCTAGCTTCAAC 8783 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| |||||||||||||| ||||| || || || | ||| |||||||| Sbjct 8784 TTCGAGAGTAATGGTTTTGCCAGTCAACGTCTTCACGAAAATCTGCAT 8831 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 171873 GTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCA 171932 |||| |||||| || |||||||| || || | || | || || | || || ||| Sbjct 9091 GTAGACTCTTTTTGGATGTTATAATCGGACAATGTGCGACCATCCTCGAGCTGCTTGCCA 9150 Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 |||||||| | || || || || ||||| || ||||| |||||||| |||||| || Sbjct 9151 GCAAAAATCAGTCGTTGCTGATCCGGTGGGATACCTTCCTTATCTTGGATTTTAGCCTTC 9210 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || ||||| | ||| ||||| ||||| || |||||||| || || ||| Sbjct 9211 ACGTTTTCAATCGTATCACTTGCTTCCACTTCCAGAGTTATTGTTTTACCTGTCAACGTT 9270 Query 172053 TTAATGAATATCTGCAT 172069 || | || || ||||| Sbjct 9271 TTGACAAAAATTTGCAT 9287 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || || || | ||| || || | || || ||| || || ||| Sbjct 9286 ATGCCACCGCGAAGCCGCAAAACAAGATGCAATGTGGATTCCTTCTGAATGTTGTAGTCT 9345 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || ||||| || ||||| ||||| || | ||| || || || Sbjct 9346 GACAACGTGCGACCATCCTCTAATTGCTTTCCAGCGAAAATCAAACGCTGCTGATCTGGC 9405 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||||||||| || ||||| || || || | ||| Sbjct 9406 GGGATTCCTTCCTTATCTTGTATTTTCGCCTTCACATTCTCAATCGTGTCGCTGGCTTCA 9465 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || || || || | || || | || |||||||| Sbjct 9466 ACCTCGAGGGTAATTGTCTTGCCCGTAAGAGTCTTCACAAAAATCTGCAT 9515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904162039721400