Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Echinostoma_20caproni_20[genbank_20GCA_5F000950555.1_202014-10-12] 86,083 sequences; 834,556,378 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6236 116 1e-20 >seq6236 Length=31905 Score = 116 bits (128), Expect = 1e-20 Identities = 216/313 (69%), Gaps = 12/313 (4%) Strand=Plus/Plus Query 302574 TTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGT 302633 ||||||| |||||||| ||||| |||||||||||||| || ||||| ||||| || Sbjct 13859 TTCCATAGCTTTGATTAACCGACGTTGAATATAACCAGTCTCAGCAGTTTTCACAGCAGT 13918 Query 302634 ATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCC 302693 ||| |||||||| ||||||| ||||| || || ||||| | |||| |||| || || Sbjct 13919 ATCGATTAGACCTTCACGACCGCCCATGGCGTGAAAGAAGAACTCTGTCGGTGTGAGACC 13978 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGC---GAATCGTCGAACTTG-G 302749 ||| | ||| | || |||||||| || | ||| ||| |||||| |||| Sbjct 13979 GGCAAGGTAAGAGTTTTCCACGAAACCTCGAGACTCCGGCCCGTAATCGT----CTTGAA 14034 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | ||||| || | || | || | | || | || || ||||| || || ||||| | Sbjct 14035 TGAAGTGCGGTAAAGTACGGTGGCGAAAACCAAACGGAATCCGCTTGCCTTCTACGTTTT 14094 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATT--TAAATCACTGCCCTTGGAGCCAGC 302867 | || || | ||| | || | ||| || ||||| || | || || ||||| || || Sbjct 14095 GTTGGCCGACGCAGGCGATAACCTGAGAGATATTGATACGTGAC--CCTTTGGAACCTGC 14152 Query 302868 ATTTACCATAATA 302880 | ||||| ||| Sbjct 14153 AACGACCATGATA 14165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470194275795971